Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5855g00002 ATGACTTTGCTGCGCAAATTGTTCTTTCGTAAGCCCCCCGATGGGCTTCTTGAGATCTGTGAGAGAGTTTATGTTTTCGACTGCTGCTTCATGACGGATGCTTGGAATGAAGAAAACTATAAAGTCTACATTGACGGAATTGTTGCTCAACTTCGAGAGCACTTTCCTGATGCTTCGATCTTGGTCTTCAATTTCCGCCAGGAAGAAACAAAGAGTCAGATGGCTAACATCTTGTCAGACTACGATATGACTATAATGGACTACCCTCGGCAATATGAGGGCTGCCCAGTGCTCAAGATGGAGGTCATCCACCACTTTTTACGGTCGAGTGAAAGTTGGCTCTCGCTTGGGCAGCATAATGTTCTGTTGATGCACTGTGAACGTGGTGGCTGGCCGGTTTTGGCTTTCATGCTGGCTGCGCTTTTGATTTATCGAAAGCAATACAGCGGAGAACAGAGAACTTTGGATATGGTTTACAGGCAGGCTCCACGTGAGCTTTTGCAGTTTTTGTCACCGTTAAATCCAATTCCTTCCCAGCTGCGGTATCTGCAGTATATTTCCAGGAGGAATGTGGCCATAGATTGGCCGCCATTGGACAGGGCGCTTACGTTGGACTGCATCATTCTCAGATGTTTCCCGAACTTTGATGGGGAAGGTGGATGCTGTCCTGTATTTCGAATTTATGGACAAGATCCTTTTCTTGCAGATAAAACTCCAAAAATCTTGTACTCAACACAGAAGAAAAATAAAACCATCCGGTTTTACAAGCAGGGAGAGTGTGAACTAATTAAAATTGACATCAACTGTCATATCCAAGGTGACGTTGTGATTGAATGCATTAACTTGACCAGTGATATGGACCACGAACGGATGATGTTCCGAGTCATGTTCAACACAGCTTTTATTAGGTCCAACATATTGATGCTTAACCGGGATGAAGTTGATATTTTATGGGATGCTAAGGATGACTTCCCCAAGGATTTCAGAGCGGAGATCCTTTTCTCAGAGATGGATGCTGCTGCTGCTGTTATTGCTGATGGTACCTCATGCTTTGAGGAGAAGGAGGGACTGCCAGTGGAAGCATTTGCCAAAGTTCAGGAGATCTTTAACCATGTGGACTGGTTGAATCCTAAGGCTGATGTTGCACTAAATGTACTCCAACAAATTAGTGCTTCGGTGCATGACCAGATAGATAGAATTTCTACTCAGCAGCATGATACTGGATCTTTGTTGCATGAAAAAGATTCTAGAGTGCCTCAGGGAAAAAAGAATGAAGCAAAAAGGTTATTGTCATCAAATAATGAATCCCGGAGTTTGGTAAACCTCCATCTCCTTCCCTACAACCCTATGAAGGAGATTCTACCTGTTAGAACTAGACCTGCTTCATCCACTTCACAACCTCCAACACCACCCACACCCACGACTCCTCCTCAAAAGGAGCATAAACTGGTTAGAGCTGTACCTCCCCCGCCGCCGCCACCTCCACCTCCACAGAAAAAGCAATCACCGGTTAGAGTCATGCCTCCTCCACCCCCACCAATGGAAGAACCACATTTTCGACACCCTCCTCCCCAACGGCCTCCTGTAAAGGAGGAGCCTAACGTTAAAACTGGACCACCACCCCCTCCACCACCTCCTTTGAAGGTGCAGCCACCTGTTAGGGCTAAACCTCCTCCTCCTCCTCCTCCTCCACGTCTTCCTAGGAAAGCTGATTCTACCACCATATCACCACCACCACCACCTCCTCCTCCCCCTGCTGCAGAACTCTCCTCCAAGAACCCTAATCCTTTGTTGCAGAATTCTACATCTGTTCCTGCTGCTCCTAATGCTCCTCCACCTCCTCTGAAGCCGTTGCATTGGCTGAAAATATCTAGAGCAGTGCAAGGAAGTCTGTGGCATGAGGCAGCGAAATCTGGTGAAGCTTCCAAAGCCCCAGAGATTGATATGTCAGAGCTTGAGAGTCTCTTCTCAGCAGCAGTCCCAAGTTCAGGCCCCGCCAAGAAAGTAGGTGGCAGAAGCTCAGCTGGGCCTAAATCTGATAAAGTGCAACTGGTTGAGCACAGAAGAGCATATAATTGTGAAATCATGCTTTCAAAAGTAAAAGTGCCATTGCAAGATTTGATGAGCTCAGTGCTAGCACTAGAGGACTCAGCACTAGACATTGATCAGGTTGAAAACCTTATAAAGTTTTGTCACAAAGAGGAGATGGAATTACTCAAGGGTTATACTGGAGAAAAGGAGAAGTTAGGGAGGTGTGAACAGTTCTTCCTAGAGTTGATGAAAGTACCCAGGGTAGAGTCCAAACTCAGAGTGTTTTCATTCAAGATTCATTTCCAATCTCAGGTTTCTGACCTTAGAAAAAGCCTGAATATTGTAGATGCTACTGTAGAAGAGATTAGGAATTCTTTCAAATTGAAGAGAATTATGCAAACGATACTTTCTTTGGGAAATGCTTTGAAAGGAACTGCTAGAGGTTCTGCTATTGGATTCAGATTGGACAGCCTTCTTAAACTCACTGAGACACGAGCACGGAACAACAAGATGACTCTCATGCATTATCTTTGTAAGGTGTTGGCTGACAAATTACCTGAAGTTCTAGACTTCTCCAAGGATCTTTCTAACCTAGAGCCTGCAGCAAAGATCCAATTGAAGTTTTTGGCAGAGGAGATGCAAGCTGTAAGCAAAGGATTAGAGAAAGTTATCCAGGAACTCTCAACCTCTGAAAATGATGGTCCTATATCTGAGACATTCCGCAAGACTTTGAAAGACTTCCTCCGTTCTGCTGAAGCTGAAGTTCGATCACTGGCTTCATTATTCTCTGGCGTGGTAGGCATTTGA 2838 0.4521 MTLLRKLFFRKPPDGLLEICERVYVFDCCFMTDAWNEENYKVYIDGIVAQLREHFPDASILVFNFRQEETKSQMANILSDYDMTIMDYPRQYEGCPVLKMEVIHHFLRSSESWLSLGQHNVLLMHCERGGWPVLAFMLAALLIYRKQYSGEQRTLDMVYRQAPRELLQFLSPLNPIPSQLRYLQYISRRNVAIDWPPLDRALTLDCIILRCFPNFDGEGGCCPVFRIYGQDPFLADKTPKILYSTQKKNKTIRFYKQGECELIKIDINCHIQGDVVIECINLTSDMDHERMMFRVMFNTAFIRSNILMLNRDEVDILWDAKDDFPKDFRAEILFSEMDAAAAVIADGTSCFEEKEGLPVEAFAKVQEIFNHVDWLNPKADVALNVLQQISASVHDQIDRISTQQHDTGSLLHEKDSRVPQGKKNEAKRLLSSNNESRSLVNLHLLPYNPMKEILPVRTRPASSTSQPPTPPTPTTPPQKEHKLVRAVPPPPPPPPPPQKKQSPVRVMPPPPPPMEEPHFRHPPPQRPPVKEEPNVKTGPPPPPPPPLKVQPPVRAKPPPPPPPPRLPRKADSTTISPPPPPPPPPAAELSSKNPNPLLQNSTSVPAAPNAPPPPLKPLHWLKISRAVQGSLWHEAAKSGEASKAPEIDMSELESLFSAAVPSSGPAKKVGGRSSAGPKSDKVQLVEHRRAYNCEIMLSKVKVPLQDLMSSVLALEDSALDIDQVENLIKFCPXKEEMELLKGYTGEKEKLGRCEQFFLELMKVPRVESKLRVFSFKIHFQSQVSDLRKSLNIVDATVEEIRNSFKLKRIMQTILSLGNALNXGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKVLADKLPEVLDFSKDLSNLEPAAKIQLKFLAEEMQAVSKGLEKVIQELSTSENDGPISETFRKTLKDFLRSAEAEVRSLASLFSGVVGI 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5855g00002 947 Gene3D Formin, FH2 domain 601 945 IPR042201 -
Pral5855g00002 947 MobiDBLite consensus disorder prediction 397 434 - -
Pral5855g00002 947 MobiDBLite consensus disorder prediction 408 430 - -
Pral5855g00002 947 MobiDBLite consensus disorder prediction 464 518 - -
Pral5855g00002 947 SUPERFAMILY Formin homology 2 domain (FH2 domain) 577 942 - -
Pral5855g00002 947 Gene3D Protein tyrosine phosphatase superfamily 14 191 IPR029021 -
Pral5855g00002 947 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Pral5855g00002 947 SMART PTEN_C2_2 197 336 IPR014020 -
Pral5855g00002 947 Gene3D - 196 340 - -
Pral5855g00002 947 MobiDBLite consensus disorder prediction 451 617 - -
Pral5855g00002 947 Pfam Formin Homology 2 Domain 610 942 IPR015425 -
Pral5855g00002 947 PANTHER FORMIN-J 1 433 - -
Pral5855g00002 947 MobiDBLite consensus disorder prediction 528 590 - -
Pral5855g00002 947 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Pral5855g00002 947 ProSiteProfiles C2 tensin-type domain profile. 199 337 IPR014020 -
Pral5855g00002 947 SMART it6_source 605 947 IPR015425 -
Pral5855g00002 947 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 337 IPR035892 -
Pral5855g00002 947 ProSiteProfiles Formin homology-2 (FH2) domain profile. 605 947 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5855g00002 Pral-Chr5855 26966 35576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5855g00002 535 944 Protein tyrosine phosphatase (PTP) family AT5G58160 64.471 2.60e-157 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5855g00002 - - lja:Lj4g3v1983370.1 749.584