Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5850g00005 ATGATCATTCTCATGATGATGATGATTCCACCGGCGTCTTCTTCTTCTTCTTCAGCTCCTTCTCAGCCACCCCATCTTGGCGTTCACCGCTGGGCCCCATCTGCTTCTCCGGCACCGGCCCCTTCACCGTCCACCCCTGCCCCCGCTCTCCTTGCGGTACCTGTCGGCAAACCATCACCTCTGCCCTCTAAGTTGTCGGTTGACTTCAGCCCACCGCTAATTGCAATGGTGGTCGTCGTTGCCGCCGCCTTCATCGTCGTCACCTATTCCCGCCTCATCTCCCGCCACCTCGTGCCTCCGATAACCCGCCTTGCTCGCCGGTGGCGCCGCCGTAGGCGACGTTCCTACCCACCCTCCTCCTCCGGCGACCTCGACTCACTTCCTTATGATTCTCCTTTTGAGCCGATTGATGGGCCTCACATGTTCTCCCCTTATGGTCTCGACGAGTCCATCATCAAGACCATACCGTTTTCCCTCTACACCGCCAAATCCAAGGATCAATTCGAAGAGTCTCGACGCGATTGCGCGGTTTGTTTGTTGGAGTTCGAAGACGATGAGTACGTCCGAACGCTCCCTTTTTGTTCTCACACTTTTCACCTGGATTGCATCGACGTTTGGCTCAGGTCGCACGCCAATTGCCCCCTGTGCCGCGCCGGAGTTTTGTGCGCAGAGTCCCCGTTCACGCCAATGATGGCAGCGAGGATTCGGCCGAGCCTCGACGACGACACGATTTTGCATAGAATCAGTATGGACCCTATGGTCGAAGCTCCATCGCCAGTGGCTCATTCTCTGGTGTCAGAGATCACTCCTTGCAACGAAGAGCAATCACCGAGAAGGAACCACGCGAATCCGGAGGACGATCGATTCAACGGCGGTCGTGATTTCCTCCTGAAGCGATCCTACTCGTTCGGATTCGAACGGAGCTTGGCGTCAGAGAGAATGGTGATGGAGCCGGCGACGGCGTCGCCGTGGCGGTACCACCGAAGGGGAAGCAGCAGCAGCTTCTGGAGCAAAAGGCCGTCACCGTTCGGATCGTTGGGAAAGTCCAGAGTGTTCTCCTTCAGATACTACAGAGGGATGAAGTCGCCGTTCTTCCGGAGGCGAGGGTTCTTTCCTCTGTCGGAATCAAGCTGATCATACAACGGAGGAGGAGGAAGCTCGTCACGGCGAAGCAAGTCAATCGCAAGCCCGATGTTCCTGAGATCGTCAGCAGCCTTGGCGGCGGCGGGAGCAGCAGCTTTCTCGTCGAGCCGGCTGAGGTGCGGCGACCCGGAGGCATTGCTGTCACCGGAGAGATACAACAGGAGATAA 1311 0.5751 MIILMMMMIPPASSSSSSAPSQPPHLGVHRWAPSASPAPAPSPSTPAPALLAVPVGKPSPLPSKLSVDFSPPLIAMVVVVAAAFIVVTYSRLISRHLVPPITRLARRWRRRRRRSYPPSSSGDLDSLPYDSPFEPIDGPHMFSPYGLDESIIKTIPFSLYTAKSKDQFEESRRDCAVCLLEFEDDEYVRTLPFCSHTFHLDCIDVWLRSHANCPLCRAGVLCAESPFTPMMAARIRPSLDDDTILHRISMDPMVEAPSPVAHSLVSEITPCNEEQSPRRNHANPEDDRFNGGRDFLLKRSYSFGFERSLASERMVMEPATASPWRYHRRGSSSSFWSKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPLSESSXSYNGGGGSSSRRSKSIASPMFLRSSAALAAAGAAAFSSSRLRCGDPEALLSPERYNRR 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5850g00005 436 FunFam RING-H2 finger protein ATL65 140 221 - -
Pral5850g00005 436 SMART ring_2 175 216 IPR001841 -
Pral5850g00005 436 Pfam Ring finger domain 174 217 IPR001841 -
Pral5850g00005 436 ProSiteProfiles Zinc finger RING-type profile. 175 217 IPR001841 -
Pral5850g00005 436 MobiDBLite consensus disorder prediction 14 49 - -
Pral5850g00005 436 MobiDBLite consensus disorder prediction 271 291 - -
Pral5850g00005 436 CDD RING-H2_EL5-like 174 217 - -
Pral5850g00005 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 221 IPR013083 -
Pral5850g00005 436 PANTHER RING-H2 FINGER PROTEIN ATL16 58 248 IPR044600 GO:0016567|GO:0016740
Pral5850g00005 436 SUPERFAMILY RING/U-box 162 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5850g00005 Pral-Chr5850 19707 21315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5850g00005 67 436 C3H Transcription Factor Family AT3G18930 53.731 3.19e-98 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5850g00005 - K19041 gmx:100795347 518.464