Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5846g00040 ATGTCCACCATGCACCACCTCAAGAGAACAACAGTCTCACTGGCCCTTGTTACCCTCCTTTCTCTACTCTTGCTCCTTGTGAAGGCAACAGAATCACAGGAAGCAATGCGGCCACATTCTCAGGAACACCTTCAAGCGGCTCACTCCACCTGCCAAGGAACACTCTATCCTGACCTTTGTGTCTCCACCCTCGCTTCATTCCCTGATCTTGCCTCTAAATCTGTTCCCCAACGCATCTGCTCCCTCGTCAACCACACCATGTACGAGGTCAGATCCTCGTCCTCTAACTGTACTGGTCTGAGAAGAAAGCTCAGAAATCTAAACCCGCTTCAACAGAGAGCCCTCGATGATTGCCTCCAGCTGTTTGATCACACCGAGGAGGAGTTCAAAACCAGCGTGGCGGATCTGTCACAGACACAGATTGATTCCAAGTGCTACCACCACTCGCTGACTCTGCTGAGCGGCGCAATGACCAATGTTTACACTTGCCTCTACGGCTTTGCCGACGGCGACCCCAATGGACACGTGAAACGCTTCATCCAGGACAGCTTGTATCGGATTTGCCACCATGTTAGTAACTCTTTGGCTATGCTCAAGAACGTGCAGAAGGGGGTGAAGAAACAGTCTCCGTCGGAGGCATTCCCGGAGGACGGCAAAATGAAGCATGGCTTCCCGTCATGGCTCACCTCCAAAGACAGAAAGCTTCTTCAAGCTGCTGTTAATGAAACCAAGTTCGATCTGGTGGTGGCCAAAGATGGCTCCGGCAATTTCACCACTATTGGGGAAGCAGTAGCTGCGGCCCCCAACTCCACCAAAACCAGGTTTGTGATCCACATAAAAGCTGGGGCTTACTTCGAGAATGTGGATGTGATCAAGAAGAAGACCAATCTGATGTTCGTTGGAGATGGGATTGGAAAGACGGTAGTGAAAGCCAGTAGAAATGTGGTAGATGGGTGGACCACCTTTCAATCCGCTACTGTAGCGGTGGTTGGAGACGGATTCATAGCGAAAGGGATCACCATAGAGAACTCGGCGGGGCCCAGCAAGCACCAGGCGGTGGCCCTCAGGAACGGCGCCGACCTCTCCGCCTTCTACCGATGCAGCTTCGTCGGCTACCAAGACACCCTCTACGTCCATTCCCTCCGTCAGTTCTACCGTGAATGCGACATCTACGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGCCGTGCTCCAGAACTGTAACCTGTACGCTCGCAAGCCCAACGACAATCAGAAGAACCTGTTCACGGCTCAAGGGAGAGAGGACCCTAACCAGAACACAGGCATTTCCATAATCAACTCCAAGGTGGCGGCCGCGTCGGACTTAATCCCGGTGAAGTCATCGTTCAAGACGTACCTGGGGAGGCCTTGGAAGCTGTACTCGAGGACGGTGTACTCAGAATGTTTCATGGAGGATTTGATTGATCCTGCGGGATGGTTGGAATGGAACGGGTCGTTTGCATTGGACACGCTGTATTATGGGGAGTACAGGAACAGGGGTCCAGGTTCCAATACGACAGGGAGAGTGAACTGGAAAGGTTACAGGGTGATCAATTCCTCCACAGAGGCTTCCCAGTTCACTGTTGCCCAGTTCATTCAAGGCCCCGAATGGTTGAACTCCACCGGCATTCCCTTCTTCCCTGGTCTCGCCTCCTGA 1680 0.5304 MSTMHHLKRTTVSLALVTLLSLLLLLVKATESQEAMRPHSQEHLQAAHSTCQGTLYPDLCVSTLASFPDLASKSVPQRICSLVNHTMYEVRSSSSNCTGLRRKLRNLNPLQQRALDDCLQLFDHTEEEFKTSVADLSQTQIDSKCYHHSLTLLSGAMTNVYTCLYGFADGDPNGHVKRFIQDSLYRICHHVSNSLAMLKNVQKGVKKQSPSEAFPEDGKMKHGFPSWLTSKDRKLLQAAVNETKFDLVVAKDGSGNFTTIGEAVAAAPNSTKTRFVIHIKAGAYFENVDVIKKKTNLMFVGDGIGKTVVKASRNVVDGWTTFQSATVAVVGDGFIAKGITIENSAGPSKHQAVALRNGADLSAFYRCSFVGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVLQNCNLYARKPNDNQKNLFTAQGREDPNQNTGISIINSKVAAASDLIPVKSSFKTYLGRPWKLYSRTVYSECFMEDLIDPAGWLEWNGSFALDTLYYGEYRNRGPGSNTTGRVNWKGYRVINSSTEASQFTVAQFIQGPEWLNSTGIPFFPGLAS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5846g00040 559 CDD PMEI-like_3 49 200 - -
Pral5846g00040 559 SMART PMEI_2 42 197 IPR006501 GO:0004857
Pral5846g00040 559 PANTHER PECTINESTERASE 22 547 - -
Pral5846g00040 559 Pfam Pectinesterase 246 542 IPR000070 GO:0030599|GO:0042545
Pral5846g00040 559 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 201 IPR035513 -
Pral5846g00040 559 SUPERFAMILY Pectin lyase-like 244 556 IPR011050 -
Pral5846g00040 559 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 200 IPR035513 -
Pral5846g00040 559 ProSitePatterns Pectinesterase signature 2. 390 399 IPR033131 -
Pral5846g00040 559 Gene3D - 240 557 IPR012334 -
Pral5846g00040 559 NCBIfam pectinesterase inhibitor domain 15 200 IPR006501 GO:0004857
Pral5846g00040 559 FunFam Pectinesterase 240 557 - -
Pral5846g00040 559 Pfam Plant invertase/pectin methylesterase inhibitor 48 197 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5846g00040 Pral-Chr5846 192164 196659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5846g00040 71 553 Carbohydrate Esterase AT4G02320 54.435 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5846g00040 K01051 - gmx:100802881 818.535