Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5846g00011 ATGGGAAGAGCACCCTGCTGCGAGAAGGTGGGGTTGAAGAAGGGCAGATGGAGTGCTCAGGAGGATGAAATCTTGACCAAGTACATTCAGGCCAATGGCGAAGGCTCCTGGAGGGCTCTGCCCAAGAATGCCGGGCTGCTGAGGTGCGGCAAGAGTTGCAGGTTAAGATGGATCAACTACTTGAGATCTGACCTTAAGAGGGGCAACATTTCTGCTCAGGAGGAAGACCTTATTATCAAACTCCATTCTTCTTTGGGCAACAGGTGGTCCCTCATAGCGAGTCACTTGCCAGGAAGAACAGACAACGAAATTAAAAACTACTGGAATTCTCACTTAAGCAGGAAAATTTACGCCTTCAGGAGGCCGGCTAGTACGGACCAGACCGACCAAGCAGTGACCATGGACACAGCCACAGCCAATAATCCAAGCAATAATGTCACAGCAACCAAGCGCAAGGGTGGCAGAACCAGCCGTTGGGCCATGAAGAAGAACAGAAGCAACACCCGGCAAGAAGCTCCGGAGAAAACGAATCAGAACAGTGTAGCAGCGGTTCCGGAGCCACCCACGCCAGCACTAGAGAACGAAGGCTTGTCCGTTAAAAGCGATGGCATAGACTTTGAGGATTTCATGGTCCTGGAAGGTGACAATACAGAAGACAAAGCAGAGAGATCTTCAGAACAAGAAATGGGGGAGGCAAGTAACAATGGAGAAAGCGGAGATGGTTCGTTGAGGTCAGGTGGAGACACGGAAACAGCGACGACACAAGAGGGTCATCAGCAGCGCATTGATGGTGGTGGGGAGTTATGTCTTGATGACATGGTGGACACTTGGTTGCTGGAAGACGAAGGAGGTGGGGTTTCCGGCTTAACTGAAGAGAGAGAAAGAAATGATGAGGTGTCGTGTTTTGATTCCGAAAAGGCATTACGCGATCAGCAGGAGTGTCCTAATGATAATAATAATACTCTAGACTGGTACTCTCGCTCTCCCATGCCTTCCCTATTTGAATACGATCACTGGGATAATTGGGAGATTAATGTGGACGACCAGTTGATGAATCATAACGAGCCGCAGACATGGGAGGACAAACAAGACCTCTTGTCTTGGCTCTGGGAAGACGATGATTGTCAGATTCCTGAAGAGATCATCACTGATCCTGAGAAACAAAATCCGAAGCCGCCTTTGATTCTTTCTTGA 1194 0.4916 MGRAPCCEKVGLKKGRWSAQEDEILTKYIQANGEGSWRALPKNAGLLRCGKSCRLRWINYLRSDLKRGNISAQEEDLIIKLHSSLGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYAFRRPASTDQTDQAVTMDTATANNPSNNVTATKRKGGRTSRWAMKKNRSNTRQEAPEKTNQNSVAAVPEPPTPALENEGLSVKSDGIDFEDFMVLEGDNTEDKAERSSEQEMGEASNNGESGDGSLRSGGDTETATTQEGHQQRIDGGGELCLDDMVDTWLLEDEGGGVSGLTEERERNDEVSCFDSEKALRDQQECPNDNNNTLDWYSRSPMPSLFEYDHWDNWEINVDDQLMNHNEPQTWEDKQDLLSWLWEDDDCQIPEEIITDPEKQNPKPPLILS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5846g00011 397 MobiDBLite consensus disorder prediction 228 260 - -
Pral5846g00011 397 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pral5846g00011 397 CDD SANT 16 61 IPR001005 -
Pral5846g00011 397 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral5846g00011 397 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral5846g00011 397 SMART sant 66 114 IPR001005 -
Pral5846g00011 397 SMART sant 13 63 IPR001005 -
Pral5846g00011 397 FunFam Myb transcription factor 71 116 - -
Pral5846g00011 397 Gene3D - 71 116 - -
Pral5846g00011 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral5846g00011 397 MobiDBLite consensus disorder prediction 216 267 - -
Pral5846g00011 397 FunFam Myb transcription factor 11 67 - -
Pral5846g00011 397 CDD SANT 71 112 IPR001005 -
Pral5846g00011 397 Gene3D - 13 66 - -
Pral5846g00011 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral5846g00011 397 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 215 - -
Pral5846g00011 397 MobiDBLite consensus disorder prediction 137 152 - -
Pral5846g00011 397 MobiDBLite consensus disorder prediction 137 201 - -
Pral5846g00011 397 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral5846g00011 397 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5846g00011 Pral-Chr5846 58776 61490 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5846g00011 1 252 MYB Transcription Factor Family AT2G47460 50.909 2.10e-79 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5846g00011 Myb_DNA-binding 1.4e-11 CL0123