Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5846g00007 ATGCGAAAAGTTTCCCTCGCAAAAATGAGGATTGCTTTCCGACCCCAAATCGCACCTCTGACGGAAGTGAAGATTGAAGAGCAGAACTCAATCTTTTTTGGTCTTCCGACCCCAAATCGCACCTCCGATTTTTCCTCCCAAATGTTGGGAACAAGTATTCCGTCGCAAGTGTTTTTCAATATTCGTTTCGTTCTTTATGGTTTTGATCCTATCAACGAAAGCAAGGTCCGATTCAAGCTTGTAAACGGCGGTGGAGTTGACGTTGGTCAGTACGGTCCAAGTTGCACTCATGTCGTTGTGGGCAAACTTACATATGATGATCCTATTTGCGTTGCCGCAAGAAATGATGGGAAGACGCTCGTCACGGCTTTGTGGGTTGATCATAGTGTTGATATTGGCATGCCAGTTGATGCAACCTCCGTCATGTACAGACCCCTGAGAGACTTGAATGGTATACCGGGTGCGAAGACTTTGGTTGTTTGCTTGACTGGTTATCAACGTCAGGATCGGGATGACATTATGACAATGGTGGGCCTGATGGGTGCTGAATTTTCGAAGCCATTGGTGGCAAGCAAAGTTACTCATCTTATATGCTACAAATTTGAAGGAGAAAAGTATGAGCTTGCCAGTAGACTGCAGACAATTAAGTTAGTTAATCATCGGTGGTTGGAAGACTGTTTGAAGGACTGGGTGCTTCTCCCTGAGGAAAAATATAAGAAGAGTGGTTATGAACTAGAGATGATGGCAGAAGAAGCTAAAGACTCTGAAGAAGAAGCTGAAGATCTCGTGCCTGGGAATTCTGGGGGAAGAGATACAACTAAGATTCCCTTTAGTCCAAAAGTTAATAGTGCTGCATCCCCTGGCTCATCAAAACCTGTAGTAGTGGAATCTAATGCCTTTCCTGGTTCTGCTGCTCCTGAGGGATTGCGGCAAGTAAATGAGGGCCACGAGTCATTGTTAATTTTCAAAAATGAGAATAGATCTGATCAAACCAGAAACATCCATCATGATGTTCTAAAATGTTCTGGGGATACTGGCGTTTCTAGGCATGATGCATCTGGCCAGCTACCCGACACGTGTGCCAAGAGCACTAAACCTAAAAACACTTGTGTTCCAGATGCAGTTGACTGCCAAAATTTTGGTATTCCTGGAAATGCTGATTCATCGGGTCATCCTCCTGATCTTCAGGCTGGCACTTCTGAGTATGGGAAGTTGGTTAATGACTTGAGATTGACCTCTGAAAGTGTTGAAGGACATGCACACTCAGATGCAAAGGGTTGCGCTGCAAGTAACTCTAGGAAATACTTAAAGAGATTTTCTCCTTCAAGTGGCTTAAATGAAAGCCTTGGCAACATAAGTGATCCTTCTGCATCAACTTTAAATAATTTGAAATTAAGAACTGACCTAGACGCCTCTTTGAGCAAGGAGGAAAAGGCAAGTGAAAGCATCAACTTCGCCTTTGTTGAAGGCTCTGGAAAAGGAAGTGATTTTGATAACAAGAAAGGGCCAAGTAATTTGTTAACTAAAAAGAGGACGATTGAAGCTTCTACTAAATTTAAATCGAAGATGGCAACAGAAACAAAACTTTCCATTGAAGGATCCCCATTAACAGATAGCAATAAACTACCAGAGATAGAACACCATTCTCCTGTGGGCAGAGGTGATATAAAGGACCCAGAAACAGTGAGCTCGAAGTCTCTGCAAGATAATGCACCCAAAATTAATGGCAAGACTGATATTGCAGGTTTTGGCGGGGAAGAAGTCGTTCAAGATGGCAATGGAACAGAACCTCATAATGCCAGGAACGATCTTGAATGCTCATATTCAAGTGAAAAGAAGTCTAGAAATGAGGAATCAACTGGTCATGTTACCCTGGATCTATCCAACAAAGTAAGTGATAAGTTGATTAGAAAATCACCGCGCAAGAAGACAGTTGCCAAGAAATGCTTGGGTTCTAGACCTAAATCAGGTGCTACTGCTAAAAGGAAGGGTTTCATATCATTAAATGAAAGTACCCCTCAAGCTGATGATGCAGGTTGTTTAAGTGGATGGAAAGAGACAGCACTTTGTGACGGCAAGAAGCTCCATAAATCCTCTAAAATTGTCAGTGTCGAAACGTCAATGGAGCAGGAGAGTGTCTGTAAATCTGCAGAAAATGCCAATGGCAGAGAATTTCAGGATGAAGAAACAGAGGCTCCGGATGACAAATCTGAGTACAAGGGACTGGCAGCAGATGAAGACAATCGTGAATCAGTTAATCTTTTGAAAAAATCTGTTACCCAGACAGAAGGGAAGTTGGAAGCAACTCACCATGTATCAAAATCTAAATCAAAGCCTCCAAAGGAAGATACAAATGGAACTAAACCAGTGGTACTTGAGCTGGGAGACTCTACCTCCAAAGTAAAAGGAAAGCCTAAAGGGAGAAAACTTACAGAAGGCAGAAACAAGAAAGCCACATTTACCAAGGATAAAATGAGGCCTGAGATGGCTGCATCCAGAGAGAGGAAAGACGAGACAAATATGGAAACCATGGAAGCAGCTTCATTTCCTGCTGGTAAAAATAGCAGCTCAGCCGTACTGAAAAATAATTCAGAGTGTTTTGAGGAAGTGGAGAAGGAAAACAGGCCATTTGATGGAGAGGGCATTGGGGAGGGTATAAACATTGGGAATTCAGTTCTTGGTATTGGTGCAGGTCAAGCAAAGATCAGTCGAAAGACTCAGAAAAAAGTTCTTAATTCATCTACGACAGGGGATAACAGAAGAGCAAAAAGAGAAGCTGCATGTTTTATAGTAAGTGGGCATCGCTTACAGAGAAAGGAGTTTCAACAAATGATTAGGCGATTGAAAGGAAGGGTCTGCCGGGATTCTCATCAGTGGTCATATCAGGCAACACACTTCATAACCCCAGATCCTATACGCAGGACTGAGAAATTTTTTGCTGCTGCTGCATCAGGGAGGTGGATTCTTAAAACTGATTACTTAACTGCCTGTAGTCAGGAAGGTAAATTCTTGACAGAAGAACCTTATGAGTGGCACAAGAGTGGCCTCAGCGAGGATGGTGCAATCAATTTGGAGGCTCCAAGAAGATGGCGGCTTTTGAAAGAGAAGACAGGTCATGGCGCCTTTTATGGAATGCGCATTATTGTATATGGCGATTGCATTGTCCCACCTTTGGATACTCTAAAGCGTGTAGTCAAAGCAGGAGATGGAACTATATTAGCAACTTCACCTCCTTACACCCGGCTCCTTGATACCGGTATTGACTATGCCATAGTTAGCCCGGGCATGCCACGTGTTGACGTGTGGGTCCAAGAATTCTTAAAACATGAGATACCCTGTGTTTTAGCTGACTACTTGGTGGAGTATGTGTGCAAGCCCGGTATCTCACTCGAGAAACATGTACTTTATGGGACTCATGCTTGGGCAGAGAGGTCATTTGCTAACCTTCAAAGGAAGTCGGAAGAGATCATTGAGAATCCTCCAGAAATTGATGATGGTAACGACACAGCTTGCCAAGTATGTGGATCCCGAGATAGAGGAGACGTGATGCTGATTTGTGGTGATGAAAGTGGTTCCGTTGGTTGTGGAGTTGGTATCCACATCGATTGCTGCGATCCTCCTCTGAAAGCTGTTCCTGAGGAGGATTGGTTTTGTACCAAGTGCAGTGAAACCCGAAACTGCTCTATCTCTAACAAGAAAAGGAAAAAAGGCGTCTTGTCTTCCTCGAAGAGCAAGTGA 3738 0.4342 MRKVSLAKMRIAFRPQIAPLTEVKIEEQNSIFFGLPTPNRTSDFSSQMLGTSIPSQVFFNIRFVLYGFDPINESKVRFKLVNGGGVDVGQYGPSCTHVVVGKLTYDDPICVAARNDGKTLVTALWVDHSVDIGMPVDATSVMYRPLRDLNGIPGAKTLVVCLTGYQRQDRDDIMTMVGLMGAEFSKPLVASKVTHLICYKFEGEKYELASRLQTIKLVNHRWLEDCLKDWVLLPEEKYKKSGYELEMMAEEAKDSEEEAEDLVPGNSGGRDTTKIPFSPKVNSAASPGSSKPVVVESNAFPGSAAPEGLRQVNEGHESLLIFKNENRSDQTRNIHHDVLKCSGDTGVSRHDASGQLPDTCAKSTKPKNTCVPDAVDCQNFGIPGNADSSGHPPDLQAGTSEYGKLVNDLRLTSESVEGHAHSDAKGCAASNSRKYLKRFSPSSGLNESLGNISDPSASTLNNLKLRTDLDASLSKEEKASESINFAFVEGSGKGSDFDNKKGPSNLLTKKRTIEASTKFKSKMATETKLSIEGSPLTDSNKLPEIEHHSPVGRGDIKDPETVSSKSLQDNAPKINGKTDIAGFGGEEVVQDGNGTEPHNARNDLECSYSSEKKSRNEESTGHVTLDLSNKVSDKLIRKSPRKKTVAKKCLGSRPKSGATAKRKGFISLNESTPQADDAGCLSGWKETALCDGKKLHKSSKIVSVETSMEQESVCKSAENANGREFQDEETEAPDDKSEYKGLAADEDNRESVNLLKKSVTQTEGKLEATHHVSKSKSKPPKEDTNGTKPVVLELGDSTSKVKGKPKGRKLTEGRNKKATFTKDKMRPEMAASRERKDETNMETMEAASFPAGKNSSSAVLKNNSECFEEVEKENRPFDGEGIGEGINIGNSVLGIGAGQAKISRKTQKKVLNSSTTGDNRRAKREAACFIVSGHRLQRKEFQQMIRRLKGRVCRDSHQWSYQATHFITPDPIRRTEKFFAAAASGRWILKTDYLTACSQEGKFLTEEPYEWHKSGLSEDGAINLEAPRRWRLLKEKTGHGAFYGMRIIVYGDCIVPPLDTLKRVVKAGDGTILATSPPYTRLLDTGIDYAIVSPGMPRVDVWVQEFLKHEIPCVLADYLVEYVCKPGISLEKHVLYGTHAWAERSFANLQRKSEEIIENPPEIDDGNDTACQVCGSRDRGDVMLICGDESGSVGCGVGIHIDCCDPPLKAVPEEDWFCTKCSETRNCSISNKKRKKGVLSSSKSK 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5846g00007 1245 CDD BRCT_TopBP1_rpt7 928 1001 - -
Pral5846g00007 1245 SMART BRCT_7 908 1001 IPR001357 -
Pral5846g00007 1245 SMART BRCT_7 153 230 IPR001357 -
Pral5846g00007 1245 SMART BRCT_7 55 133 IPR001357 -
Pral5846g00007 1245 SMART BRCT_7 1039 1126 IPR001357 -
Pral5846g00007 1245 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 762 1236 IPR044254 -
Pral5846g00007 1245 SUPERFAMILY FYVE/PHD zinc finger 1162 1228 IPR011011 -
Pral5846g00007 1245 Gene3D BRCT domain 1038 1135 IPR036420 -
Pral5846g00007 1245 MobiDBLite consensus disorder prediction 799 819 - -
Pral5846g00007 1245 MobiDBLite consensus disorder prediction 271 293 - -
Pral5846g00007 1245 MobiDBLite consensus disorder prediction 605 620 - -
Pral5846g00007 1245 Gene3D BRCT domain 43 142 IPR036420 -
Pral5846g00007 1245 MobiDBLite consensus disorder prediction 518 537 - -
Pral5846g00007 1245 ProSiteProfiles BRCT domain profile. 156 240 IPR001357 -
Pral5846g00007 1245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1136 1237 IPR013083 -
Pral5846g00007 1245 MobiDBLite consensus disorder prediction 704 819 - -
Pral5846g00007 1245 MobiDBLite consensus disorder prediction 541 562 - -
Pral5846g00007 1245 MobiDBLite consensus disorder prediction 518 680 - -
Pral5846g00007 1245 Pfam PHD-finger 1171 1223 IPR019787 -
Pral5846g00007 1245 ProSiteProfiles BRCT domain profile. 929 1011 IPR001357 -
Pral5846g00007 1245 SUPERFAMILY BRCT domain 157 239 IPR036420 -
Pral5846g00007 1245 Gene3D BRCT domain 146 267 IPR036420 -
Pral5846g00007 1245 Gene3D BRCT domain 920 1037 IPR036420 -
Pral5846g00007 1245 MobiDBLite consensus disorder prediction 763 783 - -
Pral5846g00007 1245 SMART PHD_3 1170 1222 IPR001965 -
Pral5846g00007 1245 Pfam twin BRCT domain 158 222 IPR001357 -
Pral5846g00007 1245 MobiDBLite consensus disorder prediction 704 719 - -
Pral5846g00007 1245 ProSiteProfiles Zinc finger PHD-type profile. 1168 1224 IPR019787 -
Pral5846g00007 1245 MobiDBLite consensus disorder prediction 253 309 - -
Pral5846g00007 1245 MobiDBLite consensus disorder prediction 721 753 - -
Pral5846g00007 1245 Pfam BRCA1 C Terminus (BRCT) domain 931 997 IPR001357 -
Pral5846g00007 1245 SUPERFAMILY BRCT domain 929 1031 IPR036420 -
Pral5846g00007 1245 SUPERFAMILY BRCT domain 54 139 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5846g00007 Pral-Chr5846 34431 41081 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5846g00007 176 292 Core DNA Replication Machinery Family AT4G02110 59.664 1.26e-35 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral5846g00007 BRCT 1.8e-07 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5846g00007 K10728 - qsa:O6P43_007236 1005.36