Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5845g00007 ATGGGAGAGGTTGTTATGTTTATTGACGATTTGAAATCAATTTCTGGGATTTCTCGATGCAGAATATGTCACGAAGAAGAATTTGAGAGCTCAAAAAGCTTTGAAGCTCCCTGTGCTTGTTCTGGGACCGTCAAGTTTGCTCACAGAGATTGCATACAGAGATGGTGCAATGAGAAAGGGAATACAATCTGTGAAATATGTCTCCAGCAATACGAACCTGGTTACACGGTTCCTCCCAAGAAATTGCGGATAAATGATGAAGCAATGACCATTCGAGAAAGCCTGCAAATTTCAAGAATGGAAGAAGAAGCGCTAAATGCAAGACTAGAGGCAATAGTTGAAAGAGTGGCAATAGAAAGTGAGTACTCCGAATGCACGTCTGCCGCAGATCGAAGTGCATCTTACTGTCGATTCCTGGCCTTGGCGTTTACACTTTTTATGCTCGTGAGACATCTTCTCGCTGTGCTTACGAGTGGAACAGAAGATTACCCATTTACACTGCTGACCGTTTTAATGCTGAGGGCTGGCGGAATTGTACTGCCCATGTTCATAATTATTAGAATGATTGGAGCGATCCAAAACATAATTCAGCGCCACTATCAGGATTCTGAAGACGGAGCAGCAATATCTGATGGGTACGACAACGAAAACGGGCCACTGCGTGATGTGATTTTTAGACACACATAG 687 0.4338 MGEVVMFIDDLKSISGISRCRICHEEEFESSKSFEAPCACSGTVKFAHRDCIQRWCNEKGNTICEICLQQYEPGYTVPPKKLRINDEAMTIRESLQISRMEEEALNARLEAIVERVAIESEYSECTSAADRSASYCRFLALAFTLFMLVRHLLAVLTSGTEDYPFTLLTVLMLRAGGIVLPMFIIIRMIGAIQNIIQRHYQDSEDGAAISDGYDNENGPLRDVIFRHT 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5845g00007 228 Pfam Protein of unknown function (DUF3675) 73 189 IPR022143 -
Pral5845g00007 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 77 IPR013083 -
Pral5845g00007 228 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Pral5845g00007 228 CDD RING_CH-C4HC3_MARCH 20 67 - -
Pral5845g00007 228 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Pral5845g00007 228 SMART ringv_2 19 68 IPR011016 GO:0008270
Pral5845g00007 228 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 17 199 IPR033275 -
Pral5845g00007 228 SUPERFAMILY RING/U-box 19 72 - -
Pral5845g00007 228 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5845g00007 Pral-Chr5845 27769 29960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5845g00007 20 67 C3H Transcription Factor Family AT5G05830 40.385 1.74e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5845g00007 - - gmx:100797029 314.309