Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5844g00005 ATGGAGAATCTTAATAACCACCCGGATCAAAGAGTCACCGGAAACGGCCTCCCCCCGCCCCCTCCCCCTTCCAGTCACCCAATTCACCCTCATATCCATGAACCGTTTTTCAACCACTGCAACTTTCTACAGCCGAATGGCCATGATCCTCACATCGCCGGTAACTTCACTTACCCCCATGTCCCTGGCCCTCCCAATGGTTTTGCTAACCATAATCAACCTTATAACCACTTTAATCACATGAATGGCGATCCAAACAACTCGTTCGGTGCTGGAGGACCTCCCTCTACCAATGGCAACTCTGGATATGGTTTTAACCATCCCTTGCCTCGTCCGGGGCGGAAACGAGGTTGGCATCCCTCTACCCAAGGAGCTTCTCCAGATCAAGTTGACGGTGCTTATAATGTGAAACTTTACATTGCTCCTGTTCCAAGGACATCGACAGAAAATGATATCCGCCTGGTGTTTGAAGAACACGGAACTATTGTTGAAGTTGTTCTTTTGAGGGATAAGAAAACAGGAGAAAGACAAGGAAGTTGTTTTGTGAAATTTGCAACGTTAGATGAAGCTGAGAGGGCTATCAAAGCTTTAAGCAATCGATATACTTTCACTGGGGAGTCATCACCCATTGTTGTCAGATTTGCAGACCGAGAAAAAGAGCGTCTTGGGATTCGAGGGTTCCCCCAAATTATGGACAAAAAAAATCTCTCAGAAGAGGCGGTGGACAAAGTGTTTGTTGGTTGCATCAACAAAGAAGCTTCAAAAAAGGAAATTGAAGAAGTATTTTCTCCTTATGGACATGTGGAGGACATCTTCATTGCTCAATCTCGCGGATATTGTTTTGTCAAATTTTCAAACAGAGATATGGCTTTGGCAGCAATCAAAGCGCTGAACAATGCATTCACAATGAGGGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGACCCTAAGAAACCCAAGACCGGAGAACCCAGGGTCAACCATATGCCTGGGAGTGCATTTGGTCCATGTTCTCAAGAACCAGCTGTCTGGCTGCCACCGAACTATGGTGATTCCACTGGAGGGAGTAATCTGCCTATGGCCCCACATCATCCCACAATTCCACACCCACAAGTTGCTCCTCATATTCAAAACTGGCAACCTGCTAATGCCATGGTGCAACAACCATTTCCTTCCAAGCAAGCACATCCACAATTGGCTCCAATGCCCTCCCAGTCCATGCAGGCTCAAAAGTTATCTTCTCAACCAGTTGTTACCGAGGTGCTGAAGCAGTCGCATCCAACAGATTCATCAAGTCAAAATATAGTAGAGCAGCAGATAAATACACAGGTTAGTGGCTAA 1344 0.4606 MENLNNHPDQRVTGNGLPPPPPPSSHPIHPHIHEPFFNHCNFLQPNGHDPHIAGNFTYPHVPGPPNGFANHNQPYNHFNHMNGDPNNSFGAGGPPSTNGNSGYGFNHPLPRPGRKRGWHPSTQGASPDQVDGAYNVKLYIAPVPRTSTENDIRLVFEEHGTIVEVVLLRDKKTGERQGSCFVKFATLDEAERAIKALSNRYTFTGESSPIVVRFADREKERLGIRGFPQIMDKKNLSEEAVDKVFVGCINKEASKKEIEEVFSPYGHVEDIFIAQSRGYCFVKFSNRDMALAAIKALNNAFTMRGCDHPLIVRFADPKKPKTGEPRVNHMPGSAFGPCSQEPAVWLPPNYGDSTGGSNLPMAPHHPTIPHPQVAPHIQNWQPANAMVQQPFPSKQAHPQLAPMPSQSMQAQKLSSQPVVTEVLKQSHPTDSSSQNIVEQQINTQVSG 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5844g00005 447 SUPERFAMILY RNA-binding domain, RBD 241 328 IPR035979 GO:0003676
Pral5844g00005 447 MobiDBLite consensus disorder prediction 1 32 - -
Pral5844g00005 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 204 IPR000504 GO:0003723
Pral5844g00005 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 244 302 IPR000504 GO:0003723
Pral5844g00005 447 PANTHER RNA BINDING PROTEIN 35 385 - -
Pral5844g00005 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 217 IPR000504 GO:0003723
Pral5844g00005 447 MobiDBLite consensus disorder prediction 392 447 - -
Pral5844g00005 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 317 IPR000504 GO:0003723
Pral5844g00005 447 MobiDBLite consensus disorder prediction 65 129 - -
Pral5844g00005 447 Gene3D - 126 222 IPR012677 -
Pral5844g00005 447 Gene3D - 232 323 IPR012677 -
Pral5844g00005 447 MobiDBLite consensus disorder prediction 69 104 - -
Pral5844g00005 447 SUPERFAMILY RNA-binding domain, RBD 110 225 IPR035979 GO:0003676
Pral5844g00005 447 SMART rrm1_1 137 213 IPR000504 GO:0003723
Pral5844g00005 447 SMART rrm1_1 243 313 IPR000504 GO:0003723
Pral5844g00005 447 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5844g00005 Pral-Chr5844 31047 36975 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5844g00005 138 321 Eukaryotic Initiation Factors Gene Family AT4G34110 26.804 2.41e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5844g00005 K13207 - gmx:100776162 474.167