Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5844g00004 ATGGAGAATCTTAATAACCACCCGGATCAAAGAGTCACCGGAAACGGCCTCCCCCCGCCCCCTCCCCCTTCCAGTCACCCAATTCACCCTCATATCCATGAACCGTTTTTCAACCACTGCAACTTTCTACAGCCGAATGGCCATGATCCTCACATCGCCGGTAACTTCACTTACCCCCATGTCCCTGGCCCTCCCAATGGTTTTGCTAACCATAATCAACCTTATAACCACTTTAATCACATGAATGGCGATCCAAACAACTCGTTCGGTGCTGGAGGACCTCCCTCTACCAATGGCAACTCTGGATATGGTTTTAACCATCCCTTGCCTCGTCCGGGGCGGAAACGAGGTTGGCATCCCTCTACCCAAGGAGCTTCTCCAGATCAAGTTGACGGTGCTTATAATGTGAAACTTTACATTGCTCCTGTTCCAAGGACATCGACAGAAAATGATATCCGCCTGGTGTTTGAAGAACACGGAACTATTGTTGAAGTTGTTCTTTTGAGGGATAAGAAAACAGGAGAAAGACAAGGAAGTTGTTTTGTGAAATTTGCAACGTTAGATGAAGCTGAGAGGGCTATCAAAGCTTTAAGCAATCGATATACTTTCACTGGGGAGTCATCACCCATTGTTGTCAGATTTGCAGACCGAGAAAAAGAGCGTCTTGGGATTCGAGGGTTCCCCCAAATTATGGACAAAAAAAATCTCTCAGAAGAGGCGGTGGACAAAGTGTTTGTTGGTTGCATCAACAAAGAAGCTTCAAAAAAGGAAATTGAAGAAGTATTTTCTCCTTATGGACATGTGGAGGACATCTTCATTGCTCAATCTCGCGGATATTGTTTTGTCAAATTTTCAAACAGAGATATGGCTTTGGCAGCAATCAAAGCGCTGAACAATGCATTCACAATGAGGGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGACCCTAAGAAACCCAAGACCGGAGAACCCAGGGTCAACCATATGCCTGGGAGTGCATTTGGTCCATGTTCTCAAGAACCAGCTGTCTGGCTGCCACCGAACTATGGTGATTCCACTGGAGGGAGTAATCTGCCTATGGCCCCACATCATCCCACAATTCCACACCCACAAGTTGCTCCTCATATTCAAAACTGGCAACCTGCTAATGCCATGGTGCAACAACCATTTCCTTCCAAGCAAGCACATCCACAATTGGCTCCAATGCCCTCCCAGTCCATGCAGGCTCAAAAGTTATCTTCTCAACCAGTTGTTACCGAGGTGCTGAAGCAGTCGCATCCAACAGATTCATCAAGTCAAAATATAGTAGAGCAGCAGATAAATACACAGCCTTCCCAGACCGGAGGCAGTCCTTGTGCTGTTGCTGGCAGTACATCACCAAATATGCCAGAAAGTCCTGACGACGAAGTTTTTCCAGAGTGTGACTGGAGTGAGCATATCTGTCCTGATGGTAATAAGTACTACTATAATTGCGTAACTTGTGAAAGTAGGTGGGAGAAGCCCGACGAATATGCCTTGTATGAGAACAAACTACAAGAGCAGGAGGATCATGGCTGTCCAAATTCATAG 1572 0.4612 MENLNNHPDQRVTGNGLPPPPPPSSHPIHPHIHEPFFNHCNFLQPNGHDPHIAGNFTYPHVPGPPNGFANHNQPYNHFNHMNGDPNNSFGAGGPPSTNGNSGYGFNHPLPRPGRKRGWHPSTQGASPDQVDGAYNVKLYIAPVPRTSTENDIRLVFEEHGTIVEVVLLRDKKTGERQGSCFVKFATLDEAERAIKALSNRYTFTGESSPIVVRFADREKERLGIRGFPQIMDKKNLSEEAVDKVFVGCINKEASKKEIEEVFSPYGHVEDIFIAQSRGYCFVKFSNRDMALAAIKALNNAFTMRGCDHPLIVRFADPKKPKTGEPRVNHMPGSAFGPCSQEPAVWLPPNYGDSTGGSNLPMAPHHPTIPHPQVAPHIQNWQPANAMVQQPFPSKQAHPQLAPMPSQSMQAQKLSSQPVVTEVLKQSHPTDSSSQNIVEQQINTQPSQTGGSPCAVAGSTSPNMPESPDDEVFPECDWSEHICPDGNKYYYNCVTCESRWEKPDEYALYENKLQEQEDHGCPNS 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5844g00004 523 SUPERFAMILY WW domain 476 508 IPR036020 GO:0005515
Pral5844g00004 523 SUPERFAMILY RNA-binding domain, RBD 111 225 IPR035979 GO:0003676
Pral5844g00004 523 PANTHER RNA BINDING PROTEIN 35 430 - -
Pral5844g00004 523 Gene3D - 127 222 IPR012677 -
Pral5844g00004 523 MobiDBLite consensus disorder prediction 1 32 - -
Pral5844g00004 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 217 IPR000504 GO:0003723
Pral5844g00004 523 Gene3D - 460 519 - -
Pral5844g00004 523 SMART ww_5 472 504 IPR001202 GO:0005515
Pral5844g00004 523 ProSitePatterns WW/rsp5/WWP domain signature. 477 502 IPR001202 GO:0005515
Pral5844g00004 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 317 IPR000504 GO:0003723
Pral5844g00004 523 Gene3D - 232 323 IPR012677 -
Pral5844g00004 523 MobiDBLite consensus disorder prediction 65 129 - -
Pral5844g00004 523 ProSiteProfiles WW/rsp5/WWP domain profile. 477 504 IPR001202 GO:0005515
Pral5844g00004 523 CDD WW 475 504 IPR001202 GO:0005515
Pral5844g00004 523 MobiDBLite consensus disorder prediction 69 104 - -
Pral5844g00004 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 244 302 IPR000504 GO:0003723
Pral5844g00004 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 204 IPR000504 GO:0003723
Pral5844g00004 523 SUPERFAMILY RNA-binding domain, RBD 241 328 IPR035979 GO:0003676
Pral5844g00004 523 Pfam WW domain 475 502 IPR001202 GO:0005515
Pral5844g00004 523 MobiDBLite consensus disorder prediction 443 470 - -
Pral5844g00004 523 SMART rrm1_1 243 313 IPR000504 GO:0003723
Pral5844g00004 523 SMART rrm1_1 137 213 IPR000504 GO:0003723
Pral5844g00004 523 MobiDBLite consensus disorder prediction 443 465 - -
Pral5844g00004 523 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5844g00004 Pral-Chr5844 31047 38210 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5844g00004 138 321 Eukaryotic Initiation Factors Gene Family AT4G34110 27.411 6.36e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5844g00004 K13207 - gmx:100776162 589.726