Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5842g00017 ATGTTCTGTAGTGTTCAGAGTTCAGGCACCCCATCAAAGGCAAAAAAAGGTTTGAAATGTGGAGGGAGAATGGATCCCTCTGAATCCGATTCAACAGCTGTTTCGAACTCCACCATAGACCTAGAATTGGGCATTCAGTTAGCCTCTTCCCTCCCTAGTTCCCATCACGATCCTGAAACGTCAGATCTCAGTCCCACGGATGAGACTGATGCCCTTCAGGAAGACCTTCAGGACAAGTTGGATTTGAAGGATAAGGATGAAGGGGGCGAAGAGGAAAAGGAGGAGAAAGATTCAGGCTTTCATGATGGTATTGAAGAAAGTGGTATAGCTGATACCGGAGAATCTGAGAAGGAACAAGTGTTTCATGAAGTTAACCAGAATTGGAATGGAAATGAGGACGATGGTTGGGGGGAGAATGTGAACGAGAGTGAGAATGATAATTTTGGTATAGATAATGTAACTGTCGGTGATGAAGCAGAGAAGAACGATGAGGAAAGTAGCGGTAGAGCACACCAGTACCCGGTGAGGCCCGAAGCTGAAGATTGTGCGTTTTATCTCAGGACTGGAACTTGCAAGTTTGGGTTTAATTGCAAGTTTAATCATCCTCTTAGGAGGAAAATCCAGGTTGTTAAGGAGAAGGGAAGAGAAAGAGAAGAATCAGGAGAAAGACCGGGGCAGACTGAATGCAAGTATTATCTAAAGTCAGGGGGCTGTAAATACGGAAAGGCTTGTAAATTTAACCACACCAGAGGATGTTCTGCAACCACTATTTTGGAACTTAACTTTCTCGGCCTTCCCATTCGTCTGGGAGAGAAAGAATGCCCCTATTATATGCGTACTGGCTCTTGTAAGTTCGGTGCAAACTGCAAATTCAATCACCCTGATCCTACTGTTGTGGGAGGAAGTGATCCTCCTGCAACATATGCTAATGGTGGGGCTGTTCCTTTACAAGGTGTATCACAGCCATCTATACCCTCTTGGTCTTCTCCAAGAACATTAAATGAAACTGCTCCTTTTGTGCCAATGATGATTCCTCCTGTTCAAGGGGTTTCTCCCCAAAGTTCTGATTGGAACGGATATCAGGCACCCGTCTACCTAACAGAGAGGACTATGCACCCACCATCTACATACGTTGTGAACAACCCAGCTATTGAAACAAATGTCTATATGCCTCATCCAAAGCAGATGCAGGTTGATGAGTATCCAGAAAGGCCTGGCGAACCAGAGTGCAGTTACTACTTAAAAACTGGGCATTGCAAATTCAAATCTAATTGTAAATTTCACCATCCGAAGAGCCGCATTGCGAGACCAATATGCACCCTAAGTGACAAGGGCCTGCCTTTGCGACCTGATCAGAGTGTCTGCTCGCACTATAGTCGCTATGGAATATGCAAATATGGGCCATCTTGTAAGTTCGACCACCCACCAAACCTATTGCCGTCAAATATACCTGGACTTGATCAGGAATCCTCTTACACAAACTCTGCTAGTGCGGAAGGGGCCGAGATGGCTGGAAGTGGAAGTGCAGGTGACTCCCCAATTAAGCAGCCTGTGTAA 1557 0.4554 MFCSVQSSGTPSKAKKGLKCGGRMDPSESDSTAVSNSTIDLELGIQLASSLPSSHHDPETSDLSPTDETDALQEDLQDKLDLKDKDEGGEEEKEEKDSGFHDGIEESGIADTGESEKEQVFHEVNQNWNGNEDDGWGENVNESENDNFGIDNVTVGDEAEKNDEESSGRAHQYPVRPEAEDCAFYLRTGTCKFGFNCKFNHPLRRKIQVVKEKGREREESGERPGQTECKYYLKSGGCKYGKACKFNHTRGCSATTILELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTVVGGSDPPATYANGGAVPLQGVSQPSIPSWSSPRTLNETAPFVPMMIPPVQGVSPQSSDWNGYQAPVYLTERTMHPPSTYVVNNPAIETNVYMPHPKQMQVDEYPERPGEPECSYYLKTGHCKFKSNCKFHHPKSRIARPICTLSDKGLPLRPDQSVCSHYSRYGICKYGPSCKFDHPPNLLPSNIPGLDQESSYTNSASAEGAEMAGSGSAGDSPIKQPV 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5842g00017 518 SUPERFAMILY CCCH zinc finger 175 204 IPR036855 GO:0046872
Pral5842g00017 518 ProSiteProfiles Zinc finger C3H1-type profile. 268 296 IPR000571 GO:0046872
Pral5842g00017 518 Gene3D - 371 442 - -
Pral5842g00017 518 Gene3D - 449 499 - -
Pral5842g00017 518 MobiDBLite consensus disorder prediction 483 501 - -
Pral5842g00017 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 406 431 IPR000571 GO:0046872
Pral5842g00017 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 451 476 IPR000571 GO:0046872
Pral5842g00017 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 271 294 IPR000571 GO:0046872
Pral5842g00017 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 225 248 IPR000571 GO:0046872
Pral5842g00017 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 180 202 IPR000571 GO:0046872
Pral5842g00017 518 ProSiteProfiles Zinc finger C3H1-type profile. 449 477 IPR000571 GO:0046872
Pral5842g00017 518 Gene3D - 139 212 - -
Pral5842g00017 518 SUPERFAMILY CCCH zinc finger 227 250 IPR036855 GO:0046872
Pral5842g00017 518 SMART c3hfinal6 449 476 IPR000571 GO:0046872
Pral5842g00017 518 SMART c3hfinal6 404 431 IPR000571 GO:0046872
Pral5842g00017 518 SMART c3hfinal6 223 250 IPR000571 GO:0046872
Pral5842g00017 518 SMART c3hfinal6 176 203 IPR000571 GO:0046872
Pral5842g00017 518 SMART c3hfinal6 268 295 IPR000571 GO:0046872
Pral5842g00017 518 SUPERFAMILY CCCH zinc finger 447 474 IPR036855 GO:0046872
Pral5842g00017 518 MobiDBLite consensus disorder prediction 481 518 - -
Pral5842g00017 518 MobiDBLite consensus disorder prediction 1 152 - -
Pral5842g00017 518 PANTHER PROTEIN PHOSPHATASE RELATED 62 497 - -
Pral5842g00017 518 MobiDBLite consensus disorder prediction 72 121 - -
Pral5842g00017 518 ProSiteProfiles Zinc finger C3H1-type profile. 223 251 IPR000571 GO:0046872
Pral5842g00017 518 MobiDBLite consensus disorder prediction 28 59 - -
Pral5842g00017 518 ProSiteProfiles Zinc finger C3H1-type profile. 176 204 IPR000571 GO:0046872
Pral5842g00017 518 Gene3D - 213 298 - -
Pral5842g00017 518 MobiDBLite consensus disorder prediction 122 150 - -
Pral5842g00017 518 ProSiteProfiles Zinc finger C3H1-type profile. 404 432 IPR000571 GO:0046872
Pral5842g00017 518 SUPERFAMILY CCCH zinc finger 269 296 IPR036855 GO:0046872
Pral5842g00017 518 SUPERFAMILY CCCH zinc finger 409 432 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5842g00017 Pral-Chr5842 105605 116418 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5842g00017 173 479 C2H2 Transcription Factor Family AT3G02830 41.231 1.14e-74 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral5842g00017 zf-CCCH 2.6e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5842g00017 - - gmx:100786894 587.03