Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5842g00016 ATGGCAGGTTCAGCTGCTCTGGCTTTAGAGCCCAACGCAGACGTATTTCCATGGCTGAAATCTCTGCCTCTTGCTCCAGAGTACCATCCTACTTTGGCTGAGTTCCAAGATCCAATTGCATACATTTTTAAGATCGAGAAGGAGGCCTCCAAGTATGGAATCTGCAAAATCGTGCCCCCCGTGCCGCCTTCTCCGAAGAAGACTGCAATTGCGAATCTTTATCGCTCTCTGGCTGCCCGAGCTGCTTCCTCTGACTCTTTTGGTTCGAAAGCTCAGCCTACATTCACCACAAGGCAGCAGCAGATCGGCTTCTGCCCTCGCAGACCACGGCCCGTGCAGCGTCCTGTTTGGGAAAGTGGCGAGTACTACACATTTCAGGAATTCGAAGCCAAGGCCAAGGCTTTTGAGAAGAGCTACCTGAAAAAATGTGCAAAGAAGGCTGGGCTTTCGCCTCTGGAAATAGAAACGCTTTATTGGAAGGCGACAGTAGATAAACCCTTCTCAGTTGAGTATGCAAACGACATACCTGGTTCTGCTTTTGTTCCCCTGACTGGGAGGAAATGCAGAGAGACAGGGGAGAGTGTTAGCGTTGGCGACACTGCATGGAACATGAGAGGTGTGTCAAGGGCAAATCGCTCTTTGTTGAGATTCATGAAGGAGGAGATTCCTGGAGTCACATCGCCAATGGTGTATGTGGCTATGTTGTTCAGCTGGTTTGCTTGGCACGTTGAGGATCATGACTTGCATAGCTTGAATTACCTACACATGGGGTCAGGCAAGACGTGGTATGGCGTGCCAAGGGATGCAGCAGTGGCATTTGAGGAAGTGGTCAGAGTTGATGGTTATGGAGGAGAAATAAACCCTCTTGTGACTTTTTCTACTATTGGTGAGAAAACCACAGTGATATCACCTGAAGTATTTATTAGTGCTGGGGTTCCGTGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTTGTCACGTTTCCAAGAGCCTATCATACCGGGTTTAGTCATGGATTTAATTGTGGGGAGGCAGCTAACATTGCAACACCTGAGTGGTTGAGGGTTGCGAAAGATGCTGCTATTCGGAGGGCATCAATAAACTATCCTCCCATGGTTTCACATTTCCAATTACTTTATGACCTTGCTCTAGCTTTGTGTACTAGAATTCCTGAAAGGATCAGTCCCGAGCCACGGAGTTCTCGACTTAAAGATAAGAGGAAGGGTGAAGGAGAAACTGTAATTAAAGAATTATTTATCCAGGATGTGCTGCAAAATAATGAGCTGCTTCATGTGCTTGGGAAAGGATCTGCGGTAGTAATTCTTCCTCAGAGCTCTTCAGACATTTCTGTTTGCTCAAAATTACGTGTTGGATCCCAGCAACTGAAAGTGAACCCTCGGTATACCTTGAGTACATGCAAATCTGAAGGAGTAAACTCCTCGATAGGTTTTGTTTCTGATGACCTGGCTTACAACAGTAATCATGGAATCAAACAAGCCAAAGGTTTCTATTCAGTAAAAGAAAAGTTTGCTTCATTGTGGGAAAGGATTAGGATTTCCTCGTTAAGTGTAAATGATAACACATGCACCTCAACTTCGAAGACACTGCAAAGAGACACTGAAAAAGAAACAGATCAAAGAGATGGCTTGTCAGATCAGAGACTCTTTTCATGTGTCACATGTGGAATGTTAAGCTTTGCCTGTGTTGCTATTGTAAAGCCTAGAGAACCAGCTGCTAGATACCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGGGTGTTGGATCTGGAGTAACTAGCAATAAATTTACCGTTGCCAATGGAGATGCAACAATTTCTTCACAGAGCACCCTCACAGGATGGACAGAAAAGAATGCCCAAAGTGGTGTATTTGGTGTTCCCGTCCAGCTTGAACACCACATGCAGTTTGCAGGTCAAGACTTGAAGGAGGCTTCAAATACTGGAAAACAAAAGGAAACTACAGCTCTTGGCTTACTGGCTTCCGCATATGGAAATTCTTCTGACTCTGAGGAAGAGCAGATTGACCCAAATATTGGATGTGATGATGAAGAATCAAATGTTATAAACTATGCCTCTGGAAGTAGACCTCAAGAGGAGAATTTTAGTTTGCCCCGCGGGAGTCATCAGACTTTTGATTACTCTGTTAAGATGAAAGATTATAGTGTCACCTCAGGGGTTGCATTTAGAAGTACAAGGGCATTGCCTCATTCCTACTTGAATTGTTCCCATGATGTTCAAGATGCTGAAACTTTGATGTGCAAGGCTACAGTTCCCATTGATAATAAAAATGTTCCACTTGTGCCACAATCTGATGAAGACTCGTCTAGAATGCATATCTTCTGTCTAGAGCATGCTGCAGAAGTCGAACAGCAACTTCATCCAATAGGGGGATCACACATATTACTCCTTTGTCATCCAGATTATCCCAAGATAGAGGCCGAAGCAAAGCTTATGGCCGAAGAACTGGGGAATGATTATGCTTGGAAGGATATTGAATACAGGCATGCTACTGAAGAGGATGAGGAGAGGATTGAAGCATCACTAGATAGTGAGGAAGCTGTTCCTGGTAATGGAGACTGGGCTGTAAAACTGGGAATCAATCTCTTTTTTAGTGCCAGTCTTAGCCGCTCTCCTTTGTATAGTAAGCAGATGCCTTACAATTCTGTTATATATAATGCATTTGGCTGTAGCTCTCCAGCAAACTCAGCTACAGAGCCCAAGGTTTATCAGAGGAGGGCCAACAAGCAGAAGAAGGTAGTTGCTGGGAAATGGTGTGGCAAAGTTTGGATGTCCAATCAGGTCCATCCTCTTTTAGCAAAAATAGACTTTCAAGATGGAGAGGATGAAAAAGGATCACATGGGTGTTCATTACCCAATGAGAAAATTGAGAGGTCAGAAAGTAGCCGCAGAAACAATACTACCAATAGAAAATCCGTTAAGAAAAGGAAAATGACTGTAGAAGACAGAGGAGCCAGGAAAGCTGTTTTTGCTGAGAGACAGGGGTTTTCAGATAATTCACCTGAAGACAAAACCAACCCACGGCAAAGGAAGATGTTTAGAAATAAGCAAGCCAAATATATTGTAGGAGATGGTGATGCTTTGGAAGGGGATTATTCTACACTGGCACGTCATGGAAAACATACAAGTAACAAAACAAAATGCATTGAAAGTAGTATGGTTTCAGATGATTCGCTGGATGATAATTCTCATATGCAGCATAAGAGAAATGTTGTCAATGAACCTAAATTTTATGATGATGATGTGGTTTCACAAGATAAAATGGAATATGATTCTGACTGGCAGCAGAGGGGTGAATCTAGCAGCAAGCGAGTTGAAGATGTAGGGAGAGATGGAATTTCAGAGGATTCATTGGATGGTTGTTCTCTTCAGCTGCATAGGAAGACTTGTAAACGCAAGCAAGCCAAATACATAGCTGAAGAAGATATAACTTCCGATGGTCAAATGGAGAATTTTCAGAAGCGGCGGTTCAGTATTTCCAAAAGCAGACAAACCAAATGCTTTTCTGGGGAAGATTTATCAACATCTGATGACCAACAACAGTGTCACACTCAGAAGCAACAACAAAGGATTCCCAAAAGCAGGCATGCCAGGTACCTTGGTAAAAAGGATACTATATCTAATGACCGACTTGAAAATATTTTTCTGAAGTATCAAAGAAGGACTTCTAAAAGCAGGCAAACAAAATGCCTAATTAAGGAAGATGCATTGTCTGATGACCATTTAGAGCATCAATCTCAGAAGAAGCATAAAAGTACTCCTAGGAGCAAGCAAAAGAAATGCATTAATAGAGAAGTTTTGGATGTCTCCATTGAAAATCATCGTTTTCTGCAAAACACACCTAAAAGGAAGCAAGTTAAATGCATGGATGGAGATGACAGTAATTTGGACTATCAAGTGGAGGGGGATTCTCACCAGCAGCAGAGGAGGCTTCTTCGAAGTAATCAACTCAAATCAGAGACAGTGAGGCAAATTAAACATGCTAAACCTCGCAGTGTGAAAAAGCAGACATCCCAGTCTGTAAAACACAGTGCTCGGCTGCTTGTTAAAGCCAAGGCTTCTCAGCAAATGAAGCAGTGTCCACGTGTGCGGAATAATCAATCCAATAACTACAGAGAGTTTAGTTTACATATTGAAGAGGAGGAAGGTGGACCTAGCACACGCCTTAGGAAGAGAGCTACAAAAGTTGATGAGTCTGAGGCAATACCCAAAGAAAAGCAACCTAAAAGGAAAAAGGTGAAGAATTCCATGCCTGCAAAGGTTTCAGCTGGCCATGCTAGATTAAAGGATGAGGAGGCAGACGCATATTATCAATGTGACATTGAGGGGTGCACCCTGAGTTTTGGGTCCAAACAGGAGCTTGTGCTGCATAAGAGAAACATCTGTCCAGTAAAGGATTGTGGAAAGAAGTTTTTCTCACACAAGTATCTGGTGCAACACCGTCGAGTCCACGTGGATGACCGGCCCCTGAAGTGTCCTTGGAAGGGCTGCAAGATGACTTTCAAGTGGGCATGGGCACGCACTGAACATATTCGAGTTCATACCGGAGCTCGTCCATATGCTTGTGCTGAGCCAGGCTGTGGGCAAACATTTAGGTTTGTGTCTGATTTTAGTCGCCATAAGCGAAAGACTGGCCATTCAGCAAAGAAAAGAGACCAATAA 4704 0.4343 MAGSAALALEPNADVFPWLKSLPLAPEYHPTLAEFQDPIAYIFKIEKEASKYGICKIVPPVPPSPKKTAIANLYRSLAARAASSDSFGSKAQPTFTTRQQQIGFCPRRPRPVQRPVWESGEYYTFQEFEAKAKAFEKSYLKKCAKKAGLSPLEIETLYWKATVDKPFSVEYANDIPGSAFVPLTGRKCRETGESVSVGDTAWNMRGVSRANRSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGSGKTWYGVPRDAAVAFEEVVRVDGYGGEINPLVTFSTIGEKTTVISPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCTRIPERISPEPRSSRLKDKRKGEGETVIKELFIQDVLQNNELLHVLGKGSAVVILPQSSSDISVCSKLRVGSQQLKVNPRYTLSTCKSEGVNSSIGFVSDDLAYNSNHGIKQAKGFYSVKEKFASLWERIRISSLSVNDNTCTSTSKTLQRDTEKETDQRDGLSDQRLFSCVTCGMLSFACVAIVKPREPAARYLMSADCSFFNDWGVGSGVTSNKFTVANGDATISSQSTLTGWTEKNAQSGVFGVPVQLEHHMQFAGQDLKEASNTGKQKETTALGLLASAYGNSSDSEEEQIDPNIGCDDEESNVINYASGSRPQEENFSLPRGSHQTFDYSVKMKDYSVTSGVAFRSTRALPHSYLNCSHDVQDAETLMCKATVPIDNKNVPLVPQSDEDSSRMHIFCLEHAAEVEQQLHPIGGSHILLLCHPDYPKIEAEAKLMAEELGNDYAWKDIEYRHATEEDEERIEASLDSEEAVPGNGDWAVKLGINLFFSASLSRSPLYSKQMPYNSVIYNAFGCSSPANSATEPKVYQRRANKQKKVVAGKWCGKVWMSNQVHPLLAKIDFQDGEDEKGSHGCSLPNEKIERSESSRRNNTTNRKSVKKRKMTVEDRGARKAVFAERQGFSDNSPEDKTNPRQRKMFRNKQAKYIVGDGDALEGDYSTLARHGKHTSNKTKCIESSMVSDDSLDDNSHMQHKRNVVNEPKFYDDDVVSQDKMEYDSDWQQRGESSSKRVEDVGRDGISEDSLDGCSLQLHRKTCKRKQAKYIAEEDITSDGQMENFQKRRFSISKSRQTKCFSGEDLSTSDDQQQCHTQKQQQRIPKSRHARYLGKKDTISNDRLENIFLKYQRRTSKSRQTKCLIKEDALSDDHLEHQSQKKHKSTPRSKQKKCINREVLDVSIENHRFLQNTPKRKQVKCMDGDDSNLDYQVEGDSHQQQRRLLRSNQLKSETVRQIKHAKPRSVKKQTSQSVKHSARLLVKAKASQQMKQCPRVRNNQSNNYREFSLHIEEEEGGPSTRLRKRATKVDESEAIPKEKQPKRKKVKNSMPAKVSAGHARLKDEEADAYYQCDIEGCTLSFGSKQELVLHKRNICPVKDCGKKFFSHKYLVQHRRVHVDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYACAEPGCGQTFRFVSDFSRHKRKTGHSAKKRDQ 1567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5842g00016 1567 MobiDBLite consensus disorder prediction 988 1003 - -
Pral5842g00016 1567 MobiDBLite consensus disorder prediction 956 981 - -
Pral5842g00016 1567 FunFam Probable lysine-specific demethylase ELF6 1531 1560 - -
Pral5842g00016 1567 Pfam jmjN domain 26 59 IPR003349 -
Pral5842g00016 1567 MobiDBLite consensus disorder prediction 1182 1202 - -
Pral5842g00016 1567 ProSitePatterns Zinc finger C2H2 type domain signature. 1476 1498 IPR013087 -
Pral5842g00016 1567 MobiDBLite consensus disorder prediction 1182 1217 - -
Pral5842g00016 1567 ProSiteProfiles Zinc finger C2H2 type domain profile. 1504 1533 IPR013087 -
Pral5842g00016 1567 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 1202 - -
Pral5842g00016 1567 ProSitePatterns Zinc finger C2H2 type domain signature. 1506 1528 IPR013087 -
Pral5842g00016 1567 Pfam JmjC domain, hydroxylase 229 347 IPR003347 -
Pral5842g00016 1567 SMART c2h2final6 1451 1473 IPR013087 -
Pral5842g00016 1567 SMART c2h2final6 1504 1528 IPR013087 -
Pral5842g00016 1567 SMART c2h2final6 1474 1498 IPR013087 -
Pral5842g00016 1567 SMART c2h2final6 1534 1560 IPR013087 -
Pral5842g00016 1567 SUPERFAMILY beta-beta-alpha zinc fingers 1522 1556 IPR036236 -
Pral5842g00016 1567 MobiDBLite consensus disorder prediction 1254 1275 - -
Pral5842g00016 1567 MobiDBLite consensus disorder prediction 956 1024 - -
Pral5842g00016 1567 Gene3D Cupin 18 369 - -
Pral5842g00016 1567 ProSiteProfiles JmjN domain profile. 25 66 IPR003349 -
Pral5842g00016 1567 MobiDBLite consensus disorder prediction 1316 1356 - -
Pral5842g00016 1567 MobiDBLite consensus disorder prediction 1393 1439 - -
Pral5842g00016 1567 FunFam Probable lysine-specific demethylase ELF6 1501 1530 - -
Pral5842g00016 1567 FunFam Probable lysine-specific demethylase ELF6 18 369 - -
Pral5842g00016 1567 ProSiteProfiles Zinc finger C2H2 type domain profile. 1534 1565 IPR013087 -
Pral5842g00016 1567 SUPERFAMILY beta-beta-alpha zinc fingers 1490 1532 IPR036236 -
Pral5842g00016 1567 SMART JmjN_1 24 65 IPR003349 -
Pral5842g00016 1567 MobiDBLite consensus disorder prediction 527 546 - -
Pral5842g00016 1567 SMART cupin_9 196 365 IPR003347 -
Pral5842g00016 1567 ProSitePatterns Zinc finger C2H2 type domain signature. 1536 1560 IPR013087 -
Pral5842g00016 1567 MobiDBLite consensus disorder prediction 1393 1421 - -
Pral5842g00016 1567 SUPERFAMILY Clavaminate synthase-like 212 379 - -
Pral5842g00016 1567 MobiDBLite consensus disorder prediction 1103 1125 - -
Pral5842g00016 1567 ProSiteProfiles Zinc finger C2H2 type domain profile. 1474 1503 IPR013087 -
Pral5842g00016 1567 ProSiteProfiles JmjC domain profile. 199 365 IPR003347 -
Pral5842g00016 1567 Gene3D Classic Zinc Finger 1472 1558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5842g00016 Pral-Chr5842 100518 110630 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5842g00016 1182 1567 C2H2 Transcription Factor Family AT3G48430 38.318 5.32e-67 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5842g00016 JmjC 1.4e-34 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5842g00016 - - gmx:100775813 1976.83