Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5842g00015 ATGGCAGGTTCAGCTGCTCTGGCTTTAGAGCCCAACGCAGACGTATTTCCATGGCTGAAATCTCTGCCTCTTGCTCCAGAGTACCATCCTACTTTGGCTGAGTTCCAAGATCCAATTGCATACATTTTTAAGATCGAGAAGGAGGCCTCCAAGTATGGAATCTGCAAAATCGTGCCCCCCGTGCCGCCTTCTCCGAAGAAGACTGCAATTGCGAATCTTTATCGCTCTCTGGCTGCCCGAGCTGCTTCCTCTGACTCTTTTGGTTCGAAAGCTCAGCCTACATTCACCACAAGGCAGCAGCAGATCGGCTTCTGCCCTCGCAGACCACGGCCCGTGCAGCGTCCTGTTTGGGAAAGTGGCGAGTACTACACATTTCAGGAATTCGAAGCCAAGGCCAAGGCTTTTGAGAAGAGCTACCTGAAAAAATGTGCAAAGAAGGCTGGGCTTTCGCCTCTGGAAATAGAAACGCTTTATTGGAAGGCGACAGTAGATAAACCCTTCTCAGTTGAGTATGCAAACGACATACCTGGTTCTGCTTTTGTTCCCCTGACTGGGAGGAAATGCAGAGAGACAGGGGAGAGTGTTAGCGTTGGCGACACTGCATGGAACATGAGAGGTGTGTCAAGGGCAAATCGCTCTTTGTTGAGATTCATGAAGGAGGAGATTCCTGGAGTCACATCGCCAATGGTGTATGTGGCTATGTTGTTCAGCTGGTTTGCTTGGCACGTTGAGGATCATGACTTGCATAGCTTGAATTACCTACACATGGGGTCAGGCAAGACGTGGTATGGCGTGCCAAGGGATGCAGCAGTGGCATTTGAGGAAGTGGTCAGAGTTGATGGTTATGGAGGAGAAATAAACCCTCTTGTGACTTTTTCTACTATTGGTGAGAAAACCACAGTGATATCACCTGAAGTATTTATTAGTGCTGGGGTTCCGTGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTTGTCACGTTTCCAAGAGCCTATCATACCGGGTTTAGTCATGGATTTAATTGTGGGGAGGCAGCTAACATTGCAACACCTGAGTGGTTGAGGGTTGCGAAAGATGCTGCTATTCGGAGGGCATCAATAAACTATCCTCCCATGGTTTCACATTTCCAATTACTTTATGACCTTGCTCTAGCTTTGTGTACTAGAATTCCTGAAAGGATCAGTCCCGAGCCACGGAGTTCTCGACTTAAAGATAAGAGGAAGGGTGAAGGAGAAACTGTAATTAAAGAATTATTTATCCAGGATGTGCTGCAAAATAATGAGCTGCTTCATGTGCTTGGGAAAGGATCTGCGGTAGTAATTCTTCCTCAGAGCTCTTCAGACATTTCTGTTTGCTCAAAATTACGTGTTGGATCCCAGCAACTGAAAGTGAACCCTCGGTATACCTTGAGTACATGCAAATCTGAAGGAGTAAACTCCTCGATAGGTTTTGTTTCTGATGACCTGGCTTACAACAGTAATCATGGAATCAAACAAGCCAAAGGTTTCTATTCAGTAAAAGAAAAGTTTGCTTCATTGTGGGAAAGGATTAGGATTTCCTCGTTAAGTGTAAATGATAACACATGCACCTCAACTTCGAAGACACTGCAAAGAGACACTGAAAAAGAAACAGATCAAAGAGATGGCTTGTCAGATCAGAGACTCTTTTCATGTTCTGTAGTGTTCAGAGTTCAGGCACCCCATCAAAGGCAAAAAAAAGTAACGCCATTTTTTCCTTCGCTCACTTGTGTGTTCACACTAGACACTTCGGGCTTACTTCTCTCAGCACTCAATCAAAATATAAGCTCTCTCTCTCTCTCTCTCTCACTCTCTCTCAAACACACACACTCACATCTATTCCAGTTCCTTTTCAGTAATATCTGTTGTCACTTGTTAGGGTTTGAAATGTGGAGGGAGAATGGATCCCTCTGA 1932 0.4534 MAGSAALALEPNADVFPWLKSLPLAPEYHPTLAEFQDPIAYIFKIEKEASKYGICKIVPPVPPSPKKTAIANLYRSLAARAASSDSFGSKAQPTFTTRQQQIGFCPRRPRPVQRPVWESGEYYTFQEFEAKAKAFEKSYLKKCAKKAGLSPLEIETLYWKATVDKPFSVEYANDIPGSAFVPLTGRKCRETGESVSVGDTAWNMRGVSRANRSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGSGKTWYGVPRDAAVAFEEVVRVDGYGGEINPLVTFSTIGEKTTVISPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCTRIPERISPEPRSSRLKDKRKGEGETVIKELFIQDVLQNNELLHVLGKGSAVVILPQSSSDISVCSKLRVGSQQLKVNPRYTLSTCKSEGVNSSIGFVSDDLAYNSNHGIKQAKGFYSVKEKFASLWERIRISSLSVNDNTCTSTSKTLQRDTEKETDQRDGLSDQRLFSCSVVFRVQAPHQRQKKVTPFFPSLTCVFTLDTSGLLLSALNQNISSLSLSLSLSLKHTHSHLFQFLFSNICCHLLGFEMWRENGSL 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5842g00015 643 SUPERFAMILY Clavaminate synthase-like 212 379 - -
Pral5842g00015 643 Gene3D Cupin 18 369 - -
Pral5842g00015 643 SMART JmjN_1 24 65 IPR003349 -
Pral5842g00015 643 ProSiteProfiles JmjN domain profile. 25 66 IPR003349 -
Pral5842g00015 643 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 484 - -
Pral5842g00015 643 MobiDBLite consensus disorder prediction 527 548 - -
Pral5842g00015 643 ProSiteProfiles JmjC domain profile. 199 365 IPR003347 -
Pral5842g00015 643 Pfam JmjC domain, hydroxylase 229 347 IPR003347 -
Pral5842g00015 643 SMART cupin_9 196 365 IPR003347 -
Pral5842g00015 643 Pfam jmjN domain 26 59 IPR003349 -
Pral5842g00015 643 FunFam Probable lysine-specific demethylase ELF6 18 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5842g00015 Pral-Chr5842 100512 112791 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5842g00015 12 441 C2H2 Transcription Factor Family AT5G04240 45.759 2.92e-141 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pral5842g00015 JmjC 4.1e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5842g00015 - - qsa:O6P43_022607 900.582