Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5840g00007 ATGAGCTCTTCCATGGAGGTTACCCTGCAAAATCCCCCAGTCGACGAAACGTCCGAACAAAATGGTGTCGCCACCCAAGACCCAGCTCCTTCTCCCATGCTTTCCGAAGAGAAGGTTATCGTCTCTGTCGAAGTATGTTTGAAACCTTCAAGTACAGTTCGGATCGAGGATGTCCGTTCAGCCGTTGAGAGGATGCTCGAGAACAGGTGTTTGAGCTATATTGATGGACCCATTTCCCTGCCTCATGACGACACGTTTCTTTCAGAAAACGTGCAAAGAATCTGTATTTGCGATACTGATGAGTCGGCGAGCAATCACAATATTCTTTTGTTCTGGCAAGTCAAGCCTGATGTGCATGTGTTTCAGCTTAGTGAAGAAGGACCATGCGAGGATATAAGCACTGATGGCCAACCTTCCAGCTTCAATGAATGGATTCTTCCGGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTCAAGCAAAGATTATTAAGATATGCAGCGAGCGCTTTGCTTTTTACTGAAAAGGGCGTCGATCCCTTTCTGGTCTCATGGAACCGCATTGTTCTCTTACATGGACCTCCTGGGACTGGAAAGACGTCTTTATGTAAAGCATTAGCACAAAAATTATCCGTTCGATTCAATCAAAGATATCCCCAGTGTCAGCTGATTGAAGTTAATGCACATTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTTGCAAAGCTTTTCCAAAAGATTCAAGAAATGATAGAGGAAGAAAACAATCTGGTATTTGTTTTGATTGATGAAGTTGAAAGCCTTGCTGCTGCCAGAAAAGCTGCTCTATCTGGTTCTGAACCTTCAGACTCTATTCGGGTCGTCAATGCATTGTTAACTCAGATGGACAAGTTAAAATCTTCTCCAAATGTGATAATTCTAACTACATCCAACATAACTGATGCTATCGATATTGCTTTTGTTGATCGAGCTGATATCAAAGCATACGTTGGTCCTCCAACTCTTGAAGCTCGCTATGAAATATTAAGGTCGTGCTTGGAGGAATTGATGCGCACAGGGATCTTGACAAGTGTACAGGATTGTGTGAACATCAAACTTCCAAATTATGCTAATGCGAAGGAAAAGTTGAACACGCCTCAGAATCATGAAGCCGCCCAACTATGTAAACATTTACTTGAAACTGCAGAGGCATGTGAGGGAATGAGCGGAAGGTCTTTGAGAAAGCTTCCATTCTTGGCACATGCTGCCCTTGCCAGTCCTTCAGATTGCAACCCATTTAAGTTCTTATGCACAATGATAGAAACAGCGAAGAGGGAGCGCTCTGAGCTTCCCGACTGA 1362 0.4339 MSSSMEVTLQNPPVDETSEQNGVATQDPAPSPMLSEEKVIVSVEVCLKPSSTVRIEDVRSAVERMLENRCLSYIDGPISLPHDDTFLSENVQRICICDTDESASNHNILLFWQVKPDVHVFQLSEEGPCEDISTDGQPSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSVRFNQRYPQCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMIEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITDAIDIAFVDRADIKAYVGPPTLEARYEILRSCLEELMRTGILTSVQDCVNIKLPNYANAKEKLNTPQNHEAAQLCKHLLETAEACEGMSGRSLRKLPFLAHAALASPSDCNPFKFLCTMIETAKRERSELPD 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5840g00007 453 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 422 IPR027417 -
Pral5840g00007 453 FunFam pachytene checkpoint protein 2 homolog 134 356 - -
Pral5840g00007 453 CDD RecA-like_Pch2-like 140 338 - -
Pral5840g00007 453 ProSitePatterns AAA-protein family signature. 312 331 IPR003960 GO:0005524|GO:0016887
Pral5840g00007 453 Gene3D - 137 357 IPR027417 -
Pral5840g00007 453 SMART AAA_5 190 342 IPR003593 GO:0016887
Pral5840g00007 453 MobiDBLite consensus disorder prediction 1 34 - -
Pral5840g00007 453 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 308 322 IPR001270 GO:0005524
Pral5840g00007 453 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 194 212 IPR001270 GO:0005524
Pral5840g00007 453 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 26 450 IPR044539 -
Pral5840g00007 453 MobiDBLite consensus disorder prediction 1 28 - -
Pral5840g00007 453 Pfam ATPase family associated with various cellular activities (AAA) 194 339 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5840g00007 Pral-Chr5840 47518 54371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5840g00007 194 367 Calmodulin-binding Proteins AT3G56690 30.682 2.55e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5840g00007 K22399 - rvl:131335906 738.799