Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5839g00008 ATGGCATCATCAAGCTCTTACTCATCTCCTTGCGCTGCCTGCAAATTCCTGAGAAGAAAATGCATGCCAGGTTGCATCTTCGCGCCCTACTTCCCACCCGAGGAGCCTCAAAAATTCGCCCACGTGCACAAAATCTTCGGTGCCAGCAACGTCACCAAGCTTCTCAACGAGCTCCTTCCTCACCAGAGAGAAGACGCCGTCAACTCTCTCGCCTACGAAGCAGAGGCGCGCGTGAGAGACCCAGTTTATGGTTGCGTCGGAGCCATCTCCTTCCTTCAGAGACAGGTTCAGAGGCTTCAGAAGGAGCTCGATGCTGCAAATGCCGATCTTCTCCGTTATGCCTGCAACGAGATCCCTCCGGCTAATTCTCTCTCTATGGTGCCACCTGGTTTAGGAATCACACCTTCATCACTTCAAGTTCAACAACTTCCTCAGCGGCCAAGGTCGACGACTATGGAGTATATTAATGGAAGGATCGGCAATAATGAAGGAGGACTAGGGGGAGGAGGTGGTGGGTTGTACAGGCAATTTCCTGCTTCTTATAATTACTCTCTTCCGTATACTATTCCATGGGCTGATACAGCTTCTGATGGCATCGATGAGGGAGCTGCAGGAGGTGGTGGAGGTAATTTGTAG 636 0.5126 MASSSSYSSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFAHVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYACNEIPPANSLSMVPPGLGITPSSLQVQQLPQRPRSTTMEYINGRIGNNEGGLGGGGGGLYRQFPASYNYSLPYTIPWADTASDGIDEGAAGGGGGNL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5839g00008 211 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Pral5839g00008 211 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Pral5839g00008 211 Coils Coil 89 116 - -
Pral5839g00008 211 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5839g00008 Pral-Chr5839 43441 45464 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5839g00008 2 144 AS2 family AT5G63090 76.712 1.16e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pral5839g00008 LOB 9.5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5839g00008 - - pcin:129320934 360.147