Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5838g00055 ATGAAGAAAACAAGCAGTGACTCATCCTCAAAAGTGGATCGCAAAACCATAGAAAGGAATCGCAGAATTCACATGAAAGCGCTTTGCTTCAAGCTCGCTTCCCTTATTCCTCCCCACTACTTAAAACACACCAAGGACATGATATCGCAGCAAGACCAGCTGGACATAGCAGCGAGCTACATAAAGAATCTGAGGGAGAAACTGGAGAAGCTGAAGGGGAAGAAGGAGGAAGCCATGAAATTAAAGGAAACAAACCGTAACCAGGGAATGGAGAACATGTTCATGGCTTCCAATCTGCCACTGCTTGAGCTCAGAGACTTAGGTTCCAGCATAGAAGTGATGCTGATCAGTGGGCTGAACCGAAACTTCATGCTATATGAAGTAATCAGCGTCCTTGAAGAAGAAGGAGCAGAAGTTGTGAGTGCAAGCTTTTCTACTGTGGGTGATAAGATATTCCACACGGTTCATGCCCAGGTGAAAATTTCAAGAGTTGGTGTGGAAACCACAAGAGTGTATCAGAGGCTTCATGATTTAATCGCCCCACTTAAAAGCTGGGAATATTTTGAAGAACCATGCTCCGTGCAGCACCAGATCTTTTATTAA 603 0.4428 MKKTSSDSSSKVDRKTIERNRRIHMKALCFKLASLIPPHYLKHTKDMISQQDQLDIAASYIKNLREKLEKLKGKKEEAMKLKETNRNQGMENMFMASNLPLLELRDLGSSIEVMLISGLNRNFMLYEVISVLEEEGAEVVSASFSTVGDKIFHTVHAQVKISRVGVETTRVYQRLHDLIAPLKSWEYFEEPCSVQHQIFY 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5838g00055 200 FunFam Transcription factor bHLH162 1 93 - -
Pral5838g00055 200 Pfam Helix-loop-helix DNA-binding domain 13 64 IPR011598 GO:0046983
Pral5838g00055 200 SMART finulus 15 70 IPR011598 GO:0046983
Pral5838g00055 200 Coils Coil 54 88 - -
Pral5838g00055 200 Gene3D - 1 93 IPR036638 GO:0046983
Pral5838g00055 200 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 177 - -
Pral5838g00055 200 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 76 IPR036638 GO:0046983
Pral5838g00055 200 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 9 64 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5838g00055 Pral-Chr5838 262045 263279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5838g00055 4 179 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 33.514 2.06e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5838g00055 HLH 8.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5838g00055 - - vun:114179389 246.128