Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5838g00052 ATGACTCGTTACTCCAATCACGACCATCGTCGTCTTCTCTCTTCTCCTGCTGTATTCCCTTGCCGAGACGTCTCTCCCTCCACTCTTCTCACATCTTTGATCTCTCTCTCCCTCGATATCTGTAATTTTCAATCCAGGTTCTTCCCCACGCAGAAGCGCAATGCCAGGGAAATCATACGCCAGGTTAGTATTATCCTCATATTCCTCCAGGAACTTGCTGAAATCCCCAAACAATCCCCTGTTCTCTGCTTCTCCGAGCTCCACTTTAGTTTCCAGAAGATATTGTTCTTGCTTCAAGACTGCACTCGTGACGGTGCCAGATTATGGATGCTAATGAAATCCCAATACGTTGCCTCCGAATTTCGGGTTCTGATTCGTGGGGTTGCCACTGCTCTTGACGTATTGCCTCTTCATTGGATGAAGGTTTGTGGTGAAGTGAAGGAATTGGTGGAACTCGTAGCCAACCAAGCTCGGAAAGTGAAGTTCGAAGTCCCCCGTGACGATGAAGAGAACTCAAAACGAGTTCGTTCAATCTTGCGTCAGTTTGAGAAGGGAGTCGAACCTGACGTAGCAGATATGAAGCCAGTCTTAGATTATCTAGAGATAAAGACTTGGGCTGACTGTAACAATGAGATCGAATTCTTACTAGATGAAATGGATTTCCAGCGCTCTGAATGCGACGAGCGTGAGGTTCCCCTTCTGAGTGGTTTGATCGGATTCTTGAGCTATTGCAGGGGAGTGATATTCGAAACTCATGATTGTCGCAAACACACAGATTTCTCAGAAGGAACGTATAGTTCAGAGATGATTAAATGTATGAACCCAGAGGATTTTCGATGCCCAATTTCGCTTGAGCTGATGATGGACCCAGTAACTGTATCAACAGGTCAGACCTACGACCGAACTTCCATACAAAAATGGCTCAAATCTGGAAACAAAATCTGCCCCAAAACAGGGGCAAAGCTGAAGAACACAGACTTAATCCCAAACACAGCGCTCCGAAAGCTTATACAGCAATTATGCGTCGCCAAAGGCGTTTCCCTGACCAAATTAAACAATCAAAGTTGCGATATAGCGAAGACCATCGTGCCGGGAAGCCCCGCAGCAGCCCACGCCACTCAATTTCTCTCCTGGTTTCTTGCTCGAAGACTCGTTTTTGGAACAATGGAGGAGAAGAACAAAGCAGCATACGAGATTCGTTTGCTCGCAAGGTCCAACATTTTCAACCGGTCGTGTCTGATCCAAGTGGGGACAGTGTCCCCTCTGCTCCTCCTTTTGTCAACGAGAGACAACTCCACGCAAGAGAACGCCATTGCCGCTCTGTTGAAGCTGTCAAAGCATAACAAAGGCAAAGAAGCCATAATTGAGAATGGAGGCCTAAAGTCAATTGTCACGGTTCTCAAGAAAGGATTAAGCCCAGAATCACGCCAAATCGCAGCTGCCATCATATTCTATCTTGCTTCTGTGAAACAACACAGAAAATCAATAGGAGAAAACCCAGAGGTAATTCCTTGTCTAGTTGAACTGATGAAGGAAGGAACAACGTGCGGGAAGAAGCATGCCATGGTCGCTATCTTCGGGCTTCTCTTAAACACGAGTAATCATAAAAGAGTAATTGAAGCCAATACTGTTCAGGTGCTTGTGGATATGCTGACTTCCTCAGAGAAGGATGATGTAGCGACAGATTCGTTAACAGTTCTTGGGGCTTTAGCAGAGAACAGTGAAGGAGCCGAAGCCATGATGAAGGCGTCGGCCCTGCCTCAGATCATAGGGATACTGAAATCAACAGGGAAGAATTCAGGGAAAGAGCACTGCGTTTCGATTCTGCTATCGCTGTGCGTGAATGGAGGAGAAGATGTGATAGGGGTAATGGCGAAAGACCCATCGATAATGGCTTCATTGTATTCGCTTCTCACGGACGGGACTAGTCGTGCTACAAAGAAAGCTCGCTTCCTCATCAGGATTTTACACGAATTTAACGAAAAACCAATCTGTTCGGTTGCTGAACAACAGACTCTTGAAGTTATTGATTTGTTAGGTAGAAATTGA 2049 0.4597 MTRYSNHDHRRLLSSPAVFPCRDVSPSTLLTSLISLSLDICNFQSRFFPTQKRNAREIIRQVSIILIFLQELAEIPKQSPVLCFSELHFSFQKILFLLQDCTRDGARLWMLMKSQYVASEFRVLIRGVATALDVLPLHWMKVCGEVKELVELVANQARKVKFEVPRDDEENSKRVRSILRQFEKGVEPDVADMKPVLDYLEIKTWADCNNEIEFLLDEMDFQRSECDEREVPLLSGLIGFLSYCRGVIFETHDCRKHTDFSEGTYSSEMIKCMNPEDFRCPISLELMMDPVTVSTGQTYDRTSIQKWLKSGNKICPKTGAKLKNTDLIPNTALRKLIQQLCVAKGVSLTKLNNQSCDIAKTIVPGSPAAAHATQFLSWFLARRLVFGTMEEKNKAAYEIRLLARSNIFNRSCLIQVGTVSPLLLLLSTRDNSTQENAIAALLKLSKHNKGKEAIIENGGLKSIVTVLKKGLSPESRQIAAAIIFYLASVKQHRKSIGENPEVIPCLVELMKEGTTCGKKHAMVAIFGLLLNTSNHKRVIEANTVQVLVDMLTSSEKDDVATDSLTVLGALAENSEGAEAMMKASALPQIIGILKSTGKNSGKEHCVSILLSLCVNGGEDVIGVMAKDPSIMASLYSLLTDGTSRATKKARFLIRILHEFNEKPICSVAEQQTLEVIDLLGRN 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5838g00052 682 Pfam U-box domain 275 339 IPR003613 GO:0004842|GO:0016567
Pral5838g00052 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 417 459 IPR000225 GO:0005515
Pral5838g00052 682 SMART Ubox_2 277 340 IPR003613 GO:0004842|GO:0016567
Pral5838g00052 682 FunFam RING-type E3 ubiquitin transferase 274 346 - -
Pral5838g00052 682 Pfam Armadillo/beta-catenin-like repeat 409 445 IPR000225 GO:0005515
Pral5838g00052 682 CDD RING-Ubox_PUB 275 327 IPR045210 -
Pral5838g00052 682 SUPERFAMILY ARM repeat 388 659 IPR016024 -
Pral5838g00052 682 PANTHER U BOX DOMAIN-CONTAINING 53 656 - -
Pral5838g00052 682 FunFam RING-type E3 ubiquitin transferase 354 667 - -
Pral5838g00052 682 ProSiteProfiles U-box domain profile. 273 347 IPR003613 GO:0004842|GO:0016567
Pral5838g00052 682 SUPERFAMILY RING/U-box 262 347 - -
Pral5838g00052 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 348 IPR013083 -
Pral5838g00052 682 Gene3D - 369 676 IPR011989 -
Pral5838g00052 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 585 IPR000225 GO:0005515
Pral5838g00052 682 SMART arm_5 531 572 IPR000225 GO:0005515
Pral5838g00052 682 SMART arm_5 573 614 IPR000225 GO:0005515
Pral5838g00052 682 SMART arm_5 405 446 IPR000225 GO:0005515
Pral5838g00052 682 SMART arm_5 447 488 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5838g00052 Pral-Chr5838 238353 240865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5838g00052 10 662 U-box Gene Family AT1G60190 40.630 2.10e-163 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5838g00052 - - qsa:O6P43_022729 822.772