Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5838g00039 ATGGAGAAGATGGGCGCTGATGATCGCAGTTTGGAAGAATTTTTCGAAGAGAAGAAGCGCGTCAGGAACCCTCTTGTGCCCGTTGGTGCATTTATCACTGCTGGTGTGCTTACGGCTGGCTTAATCAGTTTCAGACAAGGCAATTCTCACTTGGGTCAGAAGTTAATGAGGGCCCGTGTGGTTGTCCAAGGTGCTACAGTGGCGCTTATGGTTGGCACTGCATACTATTATGGAGATAATCCTTGGCAATCGAGCCCTCACGAAGATGGAGTCTGGAAAATTCTTGTTCACTTAGAAGATTCAAATAACATCCCTTCAATCGATCCCAACTTCTGTGACTTCAGTTCAGTTCTTGGACTCTGTCAAAAGATATCTATGAAAATGCCCAGCGTTCGACACAAGACTCAGCACATAGGTGATAGCTTGAAGTACTCGTCCCCTGAATCGCCTTTCTCTTCATTCCAAGCTCCTTATTACGTTGCTATAAATGAAAAAGAAGAGCCTTCTCCTTCATCAACAGTAAGCAAAATCAGCCCACTTATTCTATTAGTCATAATTGTTCTAGCAGTCATCTTCTTTGTCTATGGAATCGTTCATTTGGTTCTTTGGCTTCTAATGAGAACTCCATCATCCTCCTCGCCTCTATATAATTCCAATAGATTTCCAGAATCCGCGCTTCGTCCTTTTCAAAGGCAGCTTCATCATCTCTTTCGCTTACATGATTCAGGATTAGAACAGTCTCTCATAGATGCTCTCCCTGTTTTTTACTACGAGGATGTCTTGGGTTTGAAAGAACCCTTTGACTGTGCTGTGTGTCTCTGTGAATTCTCGGAGCAGGACAAGCTGAGATTGTTGCCAATGTGCAGCCATGCTTTTCACATCAGTTGTCTGGACACGTGGCTTCTCTCAAACTCTACATGTCTTTGCAGAGCGACGATCTCATCAAGTTGCGCTTTTTCCCTGGAAAATCCGTTATTCAATAATGATAATTCATGGGTTTTGAATAGATTCAAAGGAGATGAAGAGAATGTCAATGGGCGTTCAGATACTGAGAGAGTACTAGGTAATGAAGATCGAATTACCGAAAAAAGGGTTTTTTCTGTGAGGCTTGGAAAGTTCAGAAACATTAATGGCGGAGCAGTAGAGGTTGGAGAAGAAGAGGGTAGCAGTTGTAATATGGATGGAAGGAGATGCTTCTCCATGGGTTCGTATCAGTATGTGGTGAGTGGTTCAAATCTGCAAGTGGTACTTTCTGATGTTTCAGACAATGAAGATGCTGTGGAGGGGAAGATAGGAGAGAGAATGAATGAAGGTGAGAGCTTCTCTGTGTCCAAGATATGGCTTTGGTCCAACAAGAGCAAGTTTCGAAGTTCTTCTGATGATGCTGCTTTGCCTTGGTTACTGTAA 1407 0.4321 MEKMGADDRSLEEFFEEKKRVRNPLVPVGAFITAGVLTAGLISFRQGNSHLGQKLMRARVVVQGATVALMVGTAYYYGDNPWQSSPHEDGVWKILVHLEDSNNIPSIDPNFCDFSSVLGLCQKISMKMPSVRHKTQHIGDSLKYSSPESPFSSFQAPYYVAINEKEEPSPSSTVSKISPLILLVIIVLAVIFFVYGIVHLVLWLLMRTPSSSSPLYNSNRFPESARXRPFQRQLHHLFRLHDSGLEQSLIDALPVFYYEDVLGLKEPFDCAVCLCEFSEQDKLRLLPMCSHAFHISCLDTWLLSNSTCXLCRATISSSCAFSLENPLFNNDNSWVLNRFKGDEENVNGRSDTERVLGNEDRITEKRVFSVRLGKFRNINGGAVEVGEEEGSSCNMDGRRCFSMGSYQYVVSGSNLQVVLSDVSDNEDAVEGKIGERMNEGESFSVSKIWLWSNKSKFRSSSDDAALPWLL 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5838g00039 470 ProSiteProfiles HIG1 domain profile. 1 88 IPR007667 -
Pral5838g00039 470 Gene3D - 23 82 - -
Pral5838g00039 470 SMART ring_2 270 311 IPR001841 -
Pral5838g00039 470 CDD RING-H2_EL5-like 269 312 - -
Pral5838g00039 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 318 IPR013083 -
Pral5838g00039 470 ProSiteProfiles Zinc finger RING-type profile. 270 312 IPR001841 -
Pral5838g00039 470 SUPERFAMILY RING/U-box 249 317 - -
Pral5838g00039 470 Pfam Ring finger domain 269 312 IPR001841 -
Pral5838g00039 470 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 173 449 - -
Pral5838g00039 470 FunFam E3 ubiquitin-protein ligase ATL6 233 318 - -
Pral5838g00039 470 Pfam Hypoxia induced protein conserved region 23 72 IPR007667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5838g00039 Pral-Chr5838 177743 186757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5838g00039 165 461 C3H Transcription Factor Family AT2G18650 40.708 3.98e-56 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5838g00039 - - ccav:112515637 390.963