Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5838g00016 ATGGGTGGTGGCAATGGCAAGCGAAGGTGGAGAATTTCCTTCCATCGTTCTTCTTCTTCTTCTCCCTCCTCTGATTCCAAGCTTCAACCAAAGCATCCCCCAAAGGAGTTTCTATGTCCAATTTCTGGGACTTTCATGTCCGACCCCGTTGTTGTTGCTTCGGGTCATACATTCGAACGCGTTGCCGTTCAGGTTTGCAGGGATTTGAACTTCTCCCCCAGCCTCGAAGATGGGTCTCGACCCGATTTCTCCACAGTTATTCCCAATTTGGCCATCAGAAGTACCATCTCCAATTGGTGCAAAAGCTCCGGTGTGGAACTCCCTTGCGCGCCTGAATATAGCTCGGTCGAGGGGGCTGTACGCTTATCAATGGCGTCCCAGCAGGACTCGCCAGATTTAAGGGTTTCAGAGAGGGAATTGCTGAAGGCGGTGGCGGACAACCCGCCGGTGATTTTCTCCCACGCCGCCACCGAGTTGGGTCCTCGAGTTAACCACTTCGATTCGTGCTCGTCTGAGGAATCCGTAATCATCGTGCCCAGTCCCGGCACGCCTCTGCATCTAACCACTCGTCCAACCTGTTACTCTTCATCGTCGTCTTCTTCCGCAACCGTGGAATCGGAGTTTCAAAACCCTAATGGCCCAATTTCCGAAGAAGAGGGCAAATTAGTCTCGAAGATGAAAAGTAGTGAGATTTTCGAGCAAGAAGACGCCGTAATATCACTGAGAAGCATCACGAGGAACCGAGAGGACACCCGAATTTCGCTCTGCACTCCCCGATTGCTTGACGCCCTACGATCTTTGATAGCCTCCAGGTACTCCGTTGTTCAAGTAAACGCCGTCGCTTCGGTGGTCAATCTCTCCCTCGAGAAATCCAATAAGGTGAAGATAGTTCGGCGGGGATTCGTCCCCTATCTCATTGACGTCTTGAAGGGGGGATCCGATGAATCGCAGGAACACGCAGCGGGCGCCCTCTTCAGCTTAGCTTTAGACGACGACAACAAAATGGCCATCGGAGTTCTCGGCGCGTTTCAGCCACTCATGCACGCGCTAAGATCCGAGTCGGAGCGTACCCGAAACGACTCGGCGCTCGCGTTGTACCATCTGACGTTAGTACAAAGCAATCGGTTCAAGCTCGTGAGACTCGGGGCAATTCCGACCCTACTGGCGATGTTGAGATCAGGTAAATTGACGAGCCGAGTATTGCTAATTCTTTGTAACCTTGCTGTGTGTACGGAGGGACAATCGGCGATGCTGGACGGTAATGCAGTGGATTGCTTAGTGAGTTTACTAAAGGGGAAAGAGTTGGACTCGGAGTCAACTCGTGAGAACTGTGTTGCTGCGTTGTATGCGCTCAGCCACGGAAGCTTGAGGTTCAGAGCAGTGGCGAAGGAGGGAAGGGTCATGGAGGTGTTGAAAGAGATTGAAGAGAGAGGTACAGAGAGAGCCAGAGAGAAAGCGAGGAAGATAGTGCAGACGATACGGGCGGGAGGAGAAGACGGGGAAGATGGAAACGGGTCGAATTTTGAATTGGACTCGGGCGGGCGAAACCGGAATCGGTTCCGAGGGAGGAATGACAACATTGCGAACTCGAATGTATTTTAG 1602 0.5231 MGGGNGKRRWRISFHRSSSSSPSSDSKLQPKHPPKEFLCPISGTFMSDPVVVASGHTFERVAVQVCRDLNFSPSLEDGSRPDFSTVIPNLAIRSTISNWCKSSGVELPCAPEYSSVEGAVRLSMASQQDSPDLRVSERELLKAVADNPPVIFSHAATELGPRVNHFDSCSSEESVIIVPSPGTPLHLTTRPTCYSSSSSSSATVESEFQNPNGPISEEEGKLVSKMKSSEIFEQEDAVISLRSITRNREDTRISLCTPRLLDALRSLIASRYSVVQVNAVASVVNLSLEKSNKVKIVRRGFVPYLIDVLKGGSDESQEHAAGALFSLALDDDNKMAIGVLGAFQPLMHALRSESERTRNDSALALYHLTLVQSNRFKLVRLGAIPTLLAMLRSGKLTSRVLLILCNLAVCTEGQSAMLDGNAVDCLVSLLKGKELDSESTRENCVAALYALSHGSLRFRAVAKEGRVMEVLKEIEERGTERAREKARKIVQTIRAGGEDGEDGNGSNFELDSGGRNRNRFRGRNDNIANSNVF 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5838g00016 533 MobiDBLite consensus disorder prediction 495 533 - -
Pral5838g00016 533 FunFam RING-type E3 ubiquitin transferase 14 107 - -
Pral5838g00016 533 SMART arm_5 371 409 IPR000225 GO:0005515
Pral5838g00016 533 SMART arm_5 410 453 IPR000225 GO:0005515
Pral5838g00016 533 SMART arm_5 289 329 IPR000225 GO:0005515
Pral5838g00016 533 SMART arm_5 330 370 IPR000225 GO:0005515
Pral5838g00016 533 MobiDBLite consensus disorder prediction 198 217 - -
Pral5838g00016 533 Gene3D - 218 495 IPR011989 -
Pral5838g00016 533 SUPERFAMILY RING/U-box 21 106 - -
Pral5838g00016 533 SMART Ubox_2 36 99 IPR003613 GO:0004842|GO:0016567
Pral5838g00016 533 Pfam U-box domain 34 102 IPR003613 GO:0004842|GO:0016567
Pral5838g00016 533 Pfam Armadillo/beta-catenin-like repeat 330 369 IPR000225 GO:0005515
Pral5838g00016 533 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 106 IPR013083 -
Pral5838g00016 533 MobiDBLite consensus disorder prediction 1 33 - -
Pral5838g00016 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 300 337 IPR000225 GO:0005515
Pral5838g00016 533 MobiDBLite consensus disorder prediction 198 213 - -
Pral5838g00016 533 SUPERFAMILY ARM repeat 221 492 IPR016024 -
Pral5838g00016 533 ProSiteProfiles U-box domain profile. 32 106 IPR003613 GO:0004842|GO:0016567
Pral5838g00016 533 FunFam RING-type E3 ubiquitin transferase 217 493 - -
Pral5838g00016 533 PANTHER U BOX DOMAIN-CONTAINING 26 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5838g00016 Pral-Chr5838 72086 74215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5838g00016 3 524 U-box Gene Family AT5G65200 57.377 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5838g00016 - - aip:107643932 660.603