Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5837g00011 ATGGCCTCTTCTTCTGCACTCGTAGATCCTTCCAGGCACTACACCTATAACCGCAAGCAAAAATCTCTCGGCCTCTTGTGCACCAATTTCCTGAGCTTGTATAATCGAGATAGCGTTCACTTGATCGGCCTTGACGATGCGGCTGCGCGATTAGGGGTCGAGAGGCGGCGGATCTATGATATAGTTAATGTACTGGAGAGTGTCGGGGTGCTTGCAAGAAAAGCTAAGAATCAATATACTTGGAAAGGATTTGAGGCAATTCCTGGGGCCTTACAGGAGCTCAAGGAAGAAGGTTCAAGGGAGAATTACGATGCTTTTGATGGCGGCCACGAAAATGCAAAAGTATCAGACGATGAGGACGATGAAGAAACATTGTCCAATCCTAGTACTGGAAGTCAGAATGACAAGTCTTGTCCAAACTCCACTCTTCCCAAAGCCACGAAGAATGATAACCGAAGGGAAAAGTCTCTGGCACTTCTCACTCAGAATTTTGTCAAGCTCTTTGTTTGCCATAATATGGAGTTGATTTCCCTCGATGAAGCTGCCAGGTTGTTGCTAGGAGATGCCCATAATACGTCAATAATGAGAACGAAAGTAAGACGTCTATATGATATTGCGAATGTGCTGTCCTCCATGAACCTCATTGAGAAGACTCATACATCAGACACGAGAAAACCTGCTTTTAGATGGCTCGGCTTGAAGGGGAAGATAGAGAATGAGTCTATTCACAATTCAAAACCCAACGAATCCAGGAAAAGGATATTTGGTAATGATATCACAAACATCAGTTTTAAGAGGAGTAAAGTGGATTCATTCTCTAGTGGGGGCTCAAGCCACAATACTAAGATATTAAACAAAGTGGATGGTGATAGTTGGCTCGGTCAGGCAGACAAAAGCCATCAAGATCAGGAGGACTCAAAGCAGAGTTCAAGGAGCTATCAGTTTGGTCCTTTCGCTCCCGCCTTCGTCCCCAAAGTGAGTGCCTCTGAGAATAATAATGCCAAGCGGGTCCATGATTGGGATAGCCTGGCAACTGCCTATCGTCCACAGTATCAAAACCAAGCTTTGAGAGAACTCTTCAGTCATTACATGGAAGCATGGAAATCATGGTACTCAGAAGTCGCTGGCAAGAGGCCCATCCATATTTTGTAA 1152 0.4488 MASSSALVDPSRHYTYNRKQKSLGLLCTNFLSLYNRDSVHLIGLDDAAARLGVERRRIYDIVNVLESVGVLARKAKNQYTWKGFEAIPGALQELKEEGSRENYDAFDGGHENAKVSDDEDDEETLSNPSTGSQNDKSCPNSTLPKATKNDNRREKSLALLTQNFVKLFVCHNMELISLDEAARLLLGDAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTSDTRKPAFRWLGLKGKIENESIHNSKPNESRKRIFGNDITNISFKRSKVDSFSSGGSSHNTKILNKVDGDSWLGQADKSHQDQEDSKQSSRSYQFGPFAPAFVPKVSASENNNAKRVHDWDSLATAYRPQYQNQALRELFSHYMEAWKSWYSEVAGKRPIHIL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5837g00011 383 PANTHER TRANSCRIPTION FACTOR E2F 11 352 IPR015633 GO:0000978|GO:0006357
Pral5837g00011 383 FunFam E2F transcription factor-like E2FE 147 234 - -
Pral5837g00011 383 FunFam E2F transcription factor 8 13 85 - -
Pral5837g00011 383 MobiDBLite consensus disorder prediction 126 146 - -
Pral5837g00011 383 SMART E2F_TDP_2 152 232 IPR003316 GO:0005667|GO:0006355
Pral5837g00011 383 SMART E2F_TDP_2 18 83 IPR003316 GO:0005667|GO:0006355
Pral5837g00011 383 MobiDBLite consensus disorder prediction 98 115 - -
Pral5837g00011 383 MobiDBLite consensus disorder prediction 98 152 - -
Pral5837g00011 383 SUPERFAMILY "Winged helix" DNA-binding domain 154 233 IPR036390 -
Pral5837g00011 383 Gene3D - 13 85 IPR036388 -
Pral5837g00011 383 Gene3D - 146 235 IPR036388 -
Pral5837g00011 383 Pfam E2F/DP family winged-helix DNA-binding domain 19 83 IPR003316 GO:0005667|GO:0006355
Pral5837g00011 383 Pfam E2F/DP family winged-helix DNA-binding domain 154 232 IPR003316 GO:0005667|GO:0006355
Pral5837g00011 383 SUPERFAMILY "Winged helix" DNA-binding domain 17 81 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5837g00011 Pral-Chr5837 65867 68949 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5837g00011 13 380 E2F-DP Transcription Factor Family AT3G48160 58.602 2.19e-137 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pral5837g00011 E2F_TDP 3.5e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5837g00011 K09391 - qsa:O6P43_030916 560.836