Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5835g00001 ATGGACTTAACCTCCACCGCTCTCAACCACATCGCCGCCTCCAATTCTACCGGTGCCAAATCCCCAGAACATGACGGTGAAATTCCGACCCGGATCCAGCCCGCACCGGTAAAGTCCTTGTCATTCTCCAACGGCGTCCTGAAGCGCCACCAGCCCCACCACAAACATCCCGTGCCGGTCACCTATAAAGAATGCTTGAAAAACCATGCAGCCAGCTTGGGAGGCCACGCGCTCGACGGTTGCGGCGAGTTCATGCCTTCTCCCAGTGCCAATTCTGCCGACCCCAGCTCCATCAAATGCGCCGCCTGCGGCTGCCACCGCAATTTTCATCGCCGTGAGCCCGAGGAGCCCGTTTCCACCGCAACCCACGTCATCGAGTATCAGCCCCACCATCGGCACCACCCTCCGCCACCCCCGCCGTTCCAAGCCCCGAATCGGAGCCCCAATTCAGCTTCCCCACCCCCGATCTCATCTTCCTACTACCCCTCCGCACCCCACGTGCTCCTGGCCCTCTCTGCTGGTTTACCGATCCATCCGGAGAGTACGGCTGGTCCGGCCAGTGCTTTGGGCACGCCGACTTTGAATTCTAGGAAGCGGTTCAGGACCAAGTTCACCCAAGAGCAGAAGGACAAAATGTACCAGTTCGCTGAGAGGGTGGGGTGGAAGATGCAGAAGAGAGACGAGGACTTGGTGCAGGAGTTCTGCCACGAGGTCGGGGTTGATAGAGGTGTTTTGAAGGTTTGGATGCACAATAATAAGAACACTCTGGGGAAGAAAGACGCGATGAATGGGAATATAAACGTTCTCGAGTTAGACCAAGACAACAATCACGAGAATGGAATCACCCGTAACAACAACAACGGCAGCACCCAGGATCCGAATCATCACTGCCAGAACGATAGCGGGGCAAACGCCGGTACTAACGGGTCGTCTTCATCTTCTTAA 945 0.5661 MDLTSTALNHIAASNSTGAKSPEHDGEIPTRIQPAPVKSLSFSNGVLKRHQPHHKHPVPVTYKECLKNHAASLGGHALDGCGEFMPSPSANSADPSSIKCAACGCHRNFHRREPEEPVSTATHVIEYQPHHRHHPPPPPPFQAPNRSPNSASPPPISSSYYPSAPHVLLALSAGLPIHPESTAGPASALGTPTLNSRKRFRTKFTQEQKDKMYQFAERVGWKMQKRDEDLVQEFCHEVGVDRGVLKVWMHNNKNTLGKKDAMNGNINVLELDQDNNHENGITRNNNNGSTQDPNHHCQNDSGANAGTNGSSSSS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5835g00001 314 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 51 256 - -
Pral5835g00001 314 MobiDBLite consensus disorder prediction 128 158 - -
Pral5835g00001 314 NCBIfam homeobox domain, ZF-HD class 197 254 IPR006455 -
Pral5835g00001 314 Pfam ZF-HD protein dimerisation region 60 114 IPR006456 -
Pral5835g00001 314 MobiDBLite consensus disorder prediction 134 151 - -
Pral5835g00001 314 MobiDBLite consensus disorder prediction 273 314 - -
Pral5835g00001 314 SUPERFAMILY Homeodomain-like 188 258 IPR009057 -
Pral5835g00001 314 MobiDBLite consensus disorder prediction 1 21 - -
Pral5835g00001 314 MobiDBLite consensus disorder prediction 1 31 - -
Pral5835g00001 314 Gene3D - 190 258 - -
Pral5835g00001 314 FunFam Zinc-finger homeodomain protein 2 187 258 - -
Pral5835g00001 314 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 62 113 IPR006456 -
Pral5835g00001 314 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 61 113 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5835g00001 Pral-Chr5835 28659 30067 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5835g00001 20 256 ZF-HD Transcription Factor Family AT3G28920 57.430 1.83e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pral5835g00001 ZF-HD_dimer 6.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5835g00001 - - qsa:O6P43_009085 367.851