Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5830g00008 ATGTCTCGTAAGAATGAGGGCGTGCCTGGCGACGAAGATGATTCCACTATTGATAAGAAATGCAGCACTTACTTTGATGTCTATGGCCCCCAAGGCAGGGCCGATGTTATTTTTAAATCACCTGAAGCTAATTCGACTTTGAATCTTCAGGACATTCAAGGTCTGGTAACTTGGGTTCTTGCCGAAGGATTTATGCCGTCATGGGTTTTCATTAAGAACAAACCTCTTATTCAAAAAGTGGTGATGCTCTATACTCCAGGTCTGGATGCGGCTTTGTACCTGTCACAATCTAAAATGCTCCCCTTTTTAAAAAAAGTCTGTGGCAATCCGAGGGCAGTCTTAGCTCTTAGCTGTGTTTCAGATGGAATGCAGACAATAGATGCTCTCCTAACGTGCAAGCTGAAAAGAAAGAGGGATGAAAGCAGCTCAGTTATGGAGAAACCGACCCTGATATCTCCACAAGAAAAGGGCAGTGGTGGTACGGATAATAGATCATTTACGGAGCTTACAAAAGGCATTCCTTTCCCTGTTACGTATTATACACTTACAGAGAAGGAATTAGAAGACAATGGATATTTATTTAAACAACCAGGATTTCTTTTGACTTTGCCTGCTCCTTCGGGATCTTCTCCCTTTGAAATGCTGGCGCTTGATTGTGAAATGTGCATCACAAGTGAGGGTTTTGAACTTACAAGAATTACTCTAGTGGATTTTAAAGGACAGGTCGTGCTTGATAAATTGGTTAAACCATCAAATGCTATCATTGATTACAATACCAGGTTTAGTGGTATAACACCTGAGATGTTAAATGGGGTCACCACAAATCTGAAAGACATTCAGGATGAATTTCTAAAGCTGGTTTACCAAGAGACTATTCTGGTTGGGCATTCTTTAGAAAATGATTTGTTAGCTCTGAAGATCTCTCATGATTTGGTAATTGACACAGCAGTATTATATAAACACCGCCGAGGCGCATCTCATAAAACTGCTCTGCGGATTCTTGCCAAGAAATTTCTCTCTCAGGAAATACAGCAATCAGGGAATGGACATGACAGCGCTGAAGATGCTAGAGCTGCAATGGAATTGGCACTATTGAAGATCAGACATGGACCTGACTTTGGTTCTCCCCCATCCTTCATGCGGAAGAAGCTCTCTTCTCTTTTGAGCGAGTCTAACAAAACTTCCTCTTTGATTGATGATATATCTATAGTAAAACGATATGCATCTGAGTCCTCCAATGCAATTCCTGTGACTTCTGATGATGAGGCACTTGTAAGGATCACCAAGGAGGTGAAAAATGATAAGGTACATTTTGTCTGGACACAATTTTCGGAATTACATTCATACTTGAAGAAGCAAGCTGATGATTCGGAGATCTTGAATAAAAGACTTGCAGAGATGATGTCATTGCTTACTTGTAAGAAGAATTCTGCCAAAGGTAAAGACATCAAGCTGAGGGCAACTACTGAATTGAAGGAAATTCTAGGTCGTATGGATGCTAGAATTGAAACTCTGTACAAGTCATTACCGTCTAATGCTATGTTGATAATTTGCACCGGTCATGGAGACACAGCAATTGTGCAAAGACTTAGGAGAATGCTTGCGGAGCAGAGCGAATCCACTATATGTCGTGAGGAGATTGTGGAAATCCTAGAAGAGGTTCAGGCTCGAGCTGAGGTTGCCTTGTGTTTTTTAGGTGTGAAGCATTGA 1710 0.4123 MSRKNEGVPGDEDDSTIDKKCSTYFDVYGPQGRADVIFKSPEANSTLNLQDIQGLVTWVLAEGFMPSWVFIKNKPLIQKVVMLYTPGLDAALYLSQSKMLPFLKKVCGNPRAVLALSCVSDGMQTIDALLTCKLKRKRDESSSVMEKPTLISPQEKGSGGTDNRSFTELTKGIPFPVTYYTLTEKELEDNGYLFKQPGFLLTLPAPSGSSPFEMLALDCEMCITSEGFELTRITLVDFKGQVVLDKLVKPSNAIIDYNTRFSGITPEMLNGVTTNLKDIQDEFLKLVYQETILVGHSLENDLLALKISHDLVIDTAVLYKHRRGASHKTALRILAKKFLSQEIQQSGNGHDSAEDARAAMELALLKIRHGPDFGSPPSFMRKKLSSLLSESNKTSSLIDDISIVKRYASESSNAIPVTSDDEALVRITKEVKNDKVHFVWTQFSELHSYLKKQADDSEILNKRLAEMMSLLTCKKNSAKGKDIKLRATTELKEILGRMDARIETLYKSLPSNAMLIICTGHGDTAIVQRLRRMLAEQSESTICREEIVEILEEVQARAEVALCFLGVKH 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5830g00008 569 Gene3D - 212 372 IPR036397 GO:0003676
Pral5830g00008 569 CDD REX1_like 215 364 IPR034922 -
Pral5830g00008 569 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 53 387 IPR047021 GO:0004527
Pral5830g00008 569 SMART exoiiiendus 213 372 IPR013520 -
Pral5830g00008 569 Pfam Exonuclease 216 362 IPR013520 -
Pral5830g00008 569 FunFam RNA exonuclease NEF-sp 210 374 - -
Pral5830g00008 569 SUPERFAMILY Ribonuclease H-like 214 366 IPR012337 -
Pral5830g00008 569 MobiDBLite consensus disorder prediction 141 166 - -
Pral5830g00008 569 MobiDBLite consensus disorder prediction 145 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5830g00008 Pral-Chr5830 21774 27539 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5830g00008 207 362 C2H2 Transcription Factor Family AT3G27970 27.011 2.17e-06 48.1