Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5830g00007 ATGCTTCTTCAAACGCACCACGGCCACATTTGTCAGTTTGTTCTGTGCTCTAGACTGCACAAGCGTCCTCCACTTCCCTTGTTCTCACTCTCTGCCTCTACGTCGCAGCAACCACGATTGTCTCCGACGCTGTTTGTTCCTTCCATTCTGGGCAGGGCCGATGTTATTTTTAAATCACCTGAAGCTAATTCGACTTTGAATCTTCAGGACATTCAAGGTCTGGTAACTTGGGTTCTTGCCGAAGGATTTATGCCGTCATGGGTTTTCATTAAGAACAAACCTCTTATTCAAAAAGTGGTGATGCTCTATACTCCAGGTCTGGATGCGGCTTTGTACCTGTCACAATCTAAAATGCTCCCCTTTTTAAAAAAAGTCTGTGGCAATCCGAGGGCAGTCTTAGCTCTTAGCTGTGTTTCAGATGGAATGCAGACAATAGATGCTCTCCTAACGTGCAAGCTGAAAAGAAAGAGGGATGAAAGCAGCTCAGTTATGGAGAAACCGACCCTGATATCTCCACAAGAAAAGGGCAGTGGTGGTACGGATAATAGATCATTTACGGAGCTTACAAAAGGCATTCCTTTCCCTGTTACGTATTATACACTTACAGAGAAGGAATTAGAAGACAATGGATATTTATTTAAACAACCAGGATTTCTTTTGACTTTGCCTGCTCCTTCGGGATCTTCTCCCTTTGAAATGCTGGCGCTTGATTGTGAAATGTGCATCACAAGTGAGGGTTTTGAACTTACAAGAATTACTCTAGTGGATTTTAAAGGACAGGTCGTGCTTGATAAATTGGTTAAACCATCAAATGCTATCATTGATTACAATACCAGGTTTAGTGGTATAACACCTGAGATGTTAAATGGGGTCACCACAAATCTGAAAGACATTCAGGATGAATTTCTAAAGCTGGTTTACCAAGAGACTATTCTGGTTGGGCATTCTTTAGAAAATGATTTGTTAGCTCTGAAGATCTCTCATGATTTGGTAATTGACACAGCAGTATTATATAAACACCGCCGAGGCGCATCTCATAAAACTGCTCTGCGGATTCTTGCCAAGAAATTTCTCTCTCAGGAAATACAGCAATCAGGGAATGGACATGACAGCGCTGAAGATGCTAGAGCTGCAATGGAATTGGCACTATTGAAGATCAGACATGGACCTGACTTTGGTTCTCCCCCATCCTTCATGCGGAAGAAGCTCTCTTCTCTTTTGAGCGAGTCTAACAAAACTTCCTCTTTGATTGATGATATATCTATAGTAAAACGATATGCATCTGAGTCCTCCAATGCAATTCCTGTGACTTCTGATGATGAGGCACTTGTAAGGATCACCAAGGAGGTGAAAAATGATAAGGTACATTTTGTCTGGACACAATTTTCGGAATTACATTCATACTTGAAGAAGCAAGCTGATGATTCGGAGATCTTGAATAAAAGACTTGCAGAGATGATGTCATTGCTTACTTGTAAGAAGAATTCTGCCAAAGGTAAAGACATCAAGCTGAGGGCAACTACTGAATTGAAGGAAATTCTAGGTCGTATGGATGCTAGAATTGAAACTCTGTACAAGTCATTACCGTCTAATGCTATGTTGATAATTTGCACCGGTCATGGAGACACAGCAATTGTGCAAAGACTTAGGAGAATGCTTGCGGAGCAGAGCGAATCCACTATATGTCGTGAGGAGATTGTGGAAATCCTAGAAGAGGTTCAGGCTCGAGCTGAGGTTGCCTTGTGTTTTTTAGGTGTGAAGCATTGA 1767 0.4182 MLLQTHHGHICQFVLCSRLHKRPPLPLFSLSASTSQQPRLSPTLFVPSILGRADVIFKSPEANSTLNLQDIQGLVTWVLAEGFMPSWVFIKNKPLIQKVVMLYTPGLDAALYLSQSKMLPFLKKVCGNPRAVLALSCVSDGMQTIDALLTCKLKRKRDESSSVMEKPTLISPQEKGSGGTDNRSFTELTKGIPFPVTYYTLTEKELEDNGYLFKQPGFLLTLPAPSGSSPFEMLALDCEMCITSEGFELTRITLVDFKGQVVLDKLVKPSNAIIDYNTRFSGITPEMLNGVTTNLKDIQDEFLKLVYQETILVGHSLENDLLALKISHDLVIDTAVLYKHRRGASHKTALRILAKKFLSQEIQQSGNGHDSAEDARAAMELALLKIRHGPDFGSPPSFMRKKLSSLLSESNKTSSLIDDISIVKRYASESSNAIPVTSDDEALVRITKEVKNDKVHFVWTQFSELHSYLKKQADDSEILNKRLAEMMSLLTCKKNSAKGKDIKLRATTELKEILGRMDARIETLYKSLPSNAMLIICTGHGDTAIVQRLRRMLAEQSESTICREEIVEILEEVQARAEVALCFLGVKH 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5830g00007 588 MobiDBLite consensus disorder prediction 160 185 - -
Pral5830g00007 588 FunFam RNA exonuclease NEF-sp 229 393 - -
Pral5830g00007 588 MobiDBLite consensus disorder prediction 164 185 - -
Pral5830g00007 588 Gene3D - 231 391 IPR036397 GO:0003676
Pral5830g00007 588 SMART exoiiiendus 232 391 IPR013520 -
Pral5830g00007 588 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 65 406 IPR047021 GO:0004527
Pral5830g00007 588 SUPERFAMILY Ribonuclease H-like 233 385 IPR012337 -
Pral5830g00007 588 CDD REX1_like 234 383 IPR034922 -
Pral5830g00007 588 Pfam Exonuclease 235 381 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5830g00007 Pral-Chr5830 21774 27723 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5830g00007 226 381 C2H2 Transcription Factor Family AT3G27970 27.011 2.42e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5830g00007 K14570 - gmx:100802793 852.818