Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5830g00006 ATGCTTCTTCAAACGCACCACGGCCACATTTGTCAGTTTGTTCTGTGCTCTAGACTGCACAAGCGTCCTCCACTTCCCTTGTTCTCACTCTCTGCCTCTACGTCGCAGCAACCACGATTGTCTCCGACGCTGTTTGTTCCTTCCATTCTGGGCAGGGCCGATGTTATTTTTAAATCACCTGAAGCTAATTCGACTTTGAATCTTCAGGACATTCAAGGTCTGGTAACTTGGGTTCTTGCCGAAGGATTTATGCCGTCATGGGTTTTCATTAAGAACAAACCTCTTATTCAAAAAGTGGTGATGCTCTATACTCCAGGTCTGGATGCGGCTTTGTACCTGTCACAATCTAAAATGCTCCCCTTTTTAAAAAAAGTCTGTGGCAATCCGAGGGCAGTCTTAGCTCTTAGCTGTGTTTCAGATGGAATGCAGACAATAGATGCTCTCCTAACGTGCAAGCTGAAAAGAAAGAGGGATGAAAGCAGCTCAGTTATGGAGAAACCGACCCTGATATCTCCACAAGAGGGCAGTGGTGGTACGGATAATAGATCATTTACGGAGCTTACAAAAGGCATTCCTTTCCCTGTTACGTATTATACACTTACAGAGAAGGAATTAGAAGACAATGGATATTTATTTAAACAACCAGGATTTCTTTTGACTTTGCCTGCTCCTTCGGGATCTTCTCCCTTTGAAATGCTGGCGCTTGATTGTGAAATGTGCATCACAAGTGAGGGTTTTGAACTTACAAGAATTACTCTAGTGGATTTTAAAGGACAGGTCGTGCTTGATAAATTGGTTAAACCATCAAATGCTATCATTGATTACAATACCAGGTTTAGTGGTATAACACCTGAGATGTTAAATGGGGTCACCACAAATCTGAAAGACATTCAGGATGAATTTCTAAAGCTGGTTTACCAAGAGACTATTCTGGTTGGGCATTCTTTAGAAAATGATTTGTTAGCTCTGAAGATCTCTCATGATTTGGTAATTGACACAGCAGTATTATATAAACACCGCCGAGGCGCATCTCATAAAACTGCTCTGCGGATTCTTGCCAAGAAATTTCTCTCTCAGGAAATACAGCAATCAGGGAATGGACATGACAGCGCTGAAGATGCTAGAGCTGCAATGGAATTGGCACTATTGAAGATCAGACATGGACCTGACTTTGGTTCTCCCCCATCCTTCATGCGGAAGAAGCTCTCTTCTCTTTTGAGCGAGTCTAACAAAACTTCCTCTTTGATTGATGATATATCTATAGTAAAACGATATGCATCTGAGTCCTCCAATGCAATTCCTGTGACTTCTGATGATGAGGCACTTGTAAGGATCACCAAGGAGGTGAAAAATGATAAGGTACATTTTGTCTGGACACAATTTTCGGAATTACATTCATACTTGAAGAAGCAAGCTGATGATTCGGAGATCTTGAATAAAAGACTTGCAGAGATGATGTCATTGCTTACTTGTAAGAAGAATTCTGCCAAAGGTAAAGACATCAAGCTGAGGGCAACTACTGAATTGAAGGAAATTCTAGGTCGTATGGATGCTAGAATTGAAACTCTGTACAAGTCATTACCGTCTAATGCTATGTTGATAATTTGCACCGGTCATGGAGACACAGCAATTGTGCAAAGACTTAGGAGAATGCTTGCGGAGCAGAGCGAATCCACTATATGTCGTGAGGAGATTGTGGAAATCCTAGAAGAGGTTCAGGCTCGAGCTGAGGTTGCCTTGTGTTTTTTAGGTGTGAAGCATTGA 1764 0.4189 MLLQTHHGHICQFVLCSRLHKRPPLPLFSLSASTSQQPRLSPTLFVPSILGRADVIFKSPEANSTLNLQDIQGLVTWVLAEGFMPSWVFIKNKPLIQKVVMLYTPGLDAALYLSQSKMLPFLKKVCGNPRAVLALSCVSDGMQTIDALLTCKLKRKRDESSSVMEKPTLISPQEGSGGTDNRSFTELTKGIPFPVTYYTLTEKELEDNGYLFKQPGFLLTLPAPSGSSPFEMLALDCEMCITSEGFELTRITLVDFKGQVVLDKLVKPSNAIIDYNTRFSGITPEMLNGVTTNLKDIQDEFLKLVYQETILVGHSLENDLLALKISHDLVIDTAVLYKHRRGASHKTALRILAKKFLSQEIQQSGNGHDSAEDARAAMELALLKIRHGPDFGSPPSFMRKKLSSLLSESNKTSSLIDDISIVKRYASESSNAIPVTSDDEALVRITKEVKNDKVHFVWTQFSELHSYLKKQADDSEILNKRLAEMMSLLTCKKNSAKGKDIKLRATTELKEILGRMDARIETLYKSLPSNAMLIICTGHGDTAIVQRLRRMLAEQSESTICREEIVEILEEVQARAEVALCFLGVKH 587
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pral5830g00006 587 CDD REX1_like 233 382 IPR034922 -
Pral5830g00006 587 FunFam RNA exonuclease NEF-sp 228 392 - -
Pral5830g00006 587 MobiDBLite consensus disorder prediction 162 181 - -
Pral5830g00006 587 SMART exoiiiendus 231 390 IPR013520 -
Pral5830g00006 587 SUPERFAMILY Ribonuclease H-like 232 384 IPR012337 -
Pral5830g00006 587 MobiDBLite consensus disorder prediction 164 181 - -
Pral5830g00006 587 Pfam Exonuclease 234 380 IPR013520 -
Pral5830g00006 587 Gene3D - 230 390 IPR036397 GO:0003676
Pral5830g00006 587 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 65 405 IPR047021 GO:0004527
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pral5830g00006 Pral-Chr5830 21774 27725 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5830g00006 225 380 C2H2 Transcription Factor Family AT3G27970 27.011 2.31e-06 48.1