Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5830g00001 ATGGAGGATTCTTCTTCATCTGCAGTCGAGGACACCAAGACTTGCCCTCGCGGTCACTGGAGACCCTCCGAGGATGAGAGACTCCGGCAACTCGTTCAACAATACGGTGCCCAGAACTGGAATTCAATCGCCGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTTAATCAGCTTGATCCTAGGATTAACAGAAGGCCATTTACAGAAGAGGAAGAAGAGAGGCTACTGGCAGCTCATCGCATCCATGGGAATAAGTGGGCACTCATAGCAAGGCTTTTCCCAGGTCGTACTGATAACGCTGTGAAGAATCACTGGCATGTTATAATGGCGCGCAAGCAAAGAGAACAATCTAAGTTATGCGGGAAGAGAAGCTTCCAAGAAGTTTATAACTACAATGATTCTAATTACAGTAGTTCCTCCAAGAAAATTGCATCAAATTCTTATCAAGGCGTGTTAATTAGCTCCAGAATGAATGGGTTAGAGAATGCCAGATTCTTTGATTTTCGTAACCTTGATCATAAAGATAGAATATTTGCGGATTCTCCCTCCACTTCTTTGGCTTCCTGGAGTTTTGCAACCTCCTCATCAAACGGTTCTCCTGTTGTGGATTCATTTAGAAGAGAAGGCAGAGATTTCTTCAATTCTCACTCCAATCACTACATATCAGAAATACCCAAAGGTTCCGATAGGTTTCATTGCAGAATTTATCCGAGTTCTTCAGCAAATTACAGGAGAGTCGTTCCATCAAGTGCTTTTGGTCTTTTTGGTTCCAATGATGATGGAAAGACAAAGAGGGACCTTACCAATTTCTGTGATAGCACAGCATTCACCAAGTTACGTGCTTCTACGGATCAGCGAGCGCAAGAAGATCACGAACCAATTGAACACAAAGAAGTTCCTTTTATTGATTTTCTTGGCGTGGGTGTCTCTTCGTCATAA 954 0.4319 MEDSSSSAVEDTKTCPRGHWRPSEDERLRQLVQQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSFQEVYNYNDSNYSSSSKKIASNSYQGVLISSRMNGLENARFFDFRNLDHKDRIFADSPSTSLASWSFATSSSNGSPVVDSFRREGRDFFNSHSNHYISEIPKGSDRFHCRIYPSSSANYRRVVPSSAFGLFGSNDDGKTKRDLTNFCDSTAFTKLRASTDQRAQEDHEPIEHKEVPFIDFLGVGVSSS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5830g00001 317 SMART sant 16 65 IPR001005 -
Pral5830g00001 317 SMART sant 68 116 IPR001005 -
Pral5830g00001 317 Gene3D - 17 68 - -
Pral5830g00001 317 CDD SANT 71 111 IPR001005 -
Pral5830g00001 317 Pfam Myb-like DNA-binding domain 20 80 - -
Pral5830g00001 317 PANTHER MYB PROTEIN-RELATED 17 150 - -
Pral5830g00001 317 ProSiteProfiles Myb-like domain profile. 17 63 IPR001005 -
Pral5830g00001 317 CDD SANT 20 61 IPR001005 -
Pral5830g00001 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pral5830g00001 317 FunFam MYB transcription factor 70 141 - -
Pral5830g00001 317 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Pral5830g00001 317 SUPERFAMILY Homeodomain-like 16 110 IPR009057 -
Pral5830g00001 317 Gene3D - 71 133 - -
Pral5830g00001 317 MobiDBLite consensus disorder prediction 1 23 - -
Pral5830g00001 317 FunFam MYB transcription factor 17 68 - -
Pral5830g00001 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 63 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5830g00001 Pral-Chr5830 5621 7313 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5830g00001 15 317 MYB Transcription Factor Family AT1G17950 39.744 4.56e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5830g00001 Myb_DNA-bind_6 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5830g00001 K09422 - gmx:100817328 365.155