Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5828g00028 ATGGCCCTGAAGATGGTCGTCTTCATTCTAATATTTGCTGCAGCCATGGCTGCAACTGGAGCTCAACCCCTTGCAGGATGTCCCAACAAATGCGGAGACGTGGACATTCCCTATCCATTTGGTGTGGGTGTTCAACCTCGTACTTCTCGAAACTGTTTCTTCGACGAACCATTCAAGCTCACCTGCAACAGGTCCACACTATTCTTCAGGGACGTCCCAGTTTCAAACATATCCCTCCAAGAAGGTCAGATGGACATTTCTATGCCAGTCTCCAAGATTTGTTACGATCACTCTGGAGTAAATCTAGACCAATCTACTTCCAGTTTTTACACCGGCGCCTTCACCATTTCGAACACCCAAAACAAGTTCATCAGTCTTGGCTGCGACACATTGGGCGTTATTAGTTTCCTCGACAACCTTAGCTATTCCGGTGGCTGCGTGACGCTGTGCGACACGCCTCCCCCAAAGGACATCAACCAGAACACTTGTTCGGGGACCGGGTGTTGCCAGGTGAATATTCCGGTCGGGAAGAATAATTTCTCCTTGGAAGTATCCGCTGTCAACAACCATGCCAAAGTGCTGGGCTTCAACAATTGCAGCTATGCATTTCTCTCCAAGCAGGGCTGGTTTAATTTCTCTCTCGATTATCTACAGTCCTTTCCCTTTGACATGGTTCCTTTCGCCTTAGATTGGACTATTTCGAATCTTACTTGTCAAACTGCTTCCACTAGTACCACAGGCTATGCCTGCAAATCCAACTCGTATTGTGTGGACTCTCATGATGGAGTTGGCTACAATTGCAAATGCAAAACTGGTTTTGAGGGAAATCCATATCATCCCGATGGATGTCACGATGTTGATGAGTGTAGCAGACCTAACAACTGCAGTATTCCAAAGCAATGCTCCAACTTCGATGGGGGTTACAACTGTTCTTGTCCACCTCGTTATAAAGGCGACGGCTATACTAATGGGACGGGCTGTACTTTGGAACATCGTCGATCTAAGTATAAATGGCTTGTCGTTATAGTTGCATTGGGTTTTAGTGTGGCCCTACTGGCTGTCTTCACGCTTGTCTCATCATTATGTTGGGCGCATAAGCGAAGAACTGTGAAAAATCTTAAACAAAGAAATTTTGAGCAAAATGGAGGATATATGCTACTTCGACAACTTTCACAGCAACAGGGATATGCTGAAAGAACAAAAATATTCACAGAAGTTGAACTTAAAAATGCCACAAACAACTTTCACGAGGGTAGAATAATTGGTCGTGGGGGACAATGCATTGTTTACAAGGGTATATTGCCAGTTTATGAGTTTGTGGAGAATGGCACACTTCTTGACCACATAGATCCTATGAATACTCAGTTTCCTCTTTCATGGGAGACACGATTAAGAATAGCCACAGAAACTGCTGAAGCAATCTCATATTTACATTCTACCGCGTCAATTCCTATTGTCCATCGAGATATCAAATCTGCTAATATACTTCTAGATTGTAACTTCAAGGCAAAAGTGTCTGACTTTGGAGCTTCAAGGCTTGTTCCTCTCGATGAATCTCATGCCTCCACTGTGGTGCAAGGGACATTTGGATACTTAGATCCAGAGTACCTCCATACAGGCCAATTGAATGAAAAAAGCGATGTTTATAGTTTTGGGGTCGTACTGGTGGAATTATTGACTGGAAGCAAAGTAGTAAAGTTCAATAGACTAGGACAAGTAAATTTGGCCATGTCTTTTGAGTCTTCAATGAAAGAAAACCGTTTGTGGGAAGTTCTGGACAAACAGGTGTTAGCCCAGAAGAATGTAGAGCAATTGAAAGAAGTGGCTTTATTGGCAAGGAAGTGTATTAGAGTAAAAGGAGAGGAAAGGCCCACGATGAAAGAAATATCAAAGGAGCTGGAGGGTCTGGCTGCAAATAAGGAGTGTCTTTTGATGAAATCAGATGAAAGGGAATACTCACCTGCTCATGTGCCTGATAGATATGGGGAAGCTGCCGCCTGTGAGAGCATCCATAAGCAGATGGCATTTGGGACTGAAGTTGGGCGATGA 2049 0.4402 MALKMVVFILIFAAAMAATGAQPLAGCPNKCGDVDIPYPFGVGVQPRTSRNCFFDEPFKLTCNRSTLFFRDVPVSNISLQEGQMDISMPVSKICYDHSGVNLDQSTSSFYTGAFTISNTQNKFISLGCDTLGVISFLDNLSYSGGCVTLCDTPPPKDINQNTCSGTGCCQVNIPVGKNNFSLEVSAVNNHAKVLGFNNCSYAFLSKQGWFNFSLDYLQSFPFDMVPFALDWTISNLTCQTASTSTTGYACKSNSYCVDSHDGVGYNCKCKTGFEGNPYHPDGCHDVDECSRPNNCSIPKQCSNFDGGYNCSCPPRYKGDGYTNGTGCTLEHRRSKYKWLVVIVALGFSVALLAVFTLVSSLCWAHKRRTVKNLKQRNFEQNGGYMLLRQLSQQQGYAERTKIFTEVELKNATNNFHEGRIIGRGGQCIVYKGILPVYEFVENGTLLDHIDPMNTQFPLSWETRLRIATETAEAISYLHSTASIPIVHRDIKSANILLDCNFKAKVSDFGASRLVPLDESHASTVVQGTFGYLDPEYLHTGQLNEKSDVYSFGVVLVELLTGSKVVKFNRLGQVNLAMSFESSMKENRLWEVLDKQVLAQKNVEQLKEVALLARKCIRVKGEERPTMKEISKELEGLAANKECLLMKSDEREYSPAHVPDRYGEAAACESIHKQMAFGTEVGR 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5828g00028 682 Pfam Wall-associated receptor kinase galacturonan-binding 27 86 IPR025287 GO:0030247
Pral5828g00028 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 485 497 IPR008271 GO:0004672|GO:0006468
Pral5828g00028 682 ProSiteProfiles EGF-like domain profile. 285 322 IPR000742 -
Pral5828g00028 682 SMART egf_5 288 328 IPR000742 -
Pral5828g00028 682 SMART egf_5 237 284 IPR000742 -
Pral5828g00028 682 SUPERFAMILY EGF/Laminin 285 320 - -
Pral5828g00028 682 Gene3D Transferase(Phosphotransferase) domain 1 444 654 - -
Pral5828g00028 682 FunFam Fibrillin 2 284 323 - -
Pral5828g00028 682 Coils Coil 626 646 - -
Pral5828g00028 682 ProSiteProfiles Protein kinase domain profile. 336 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5828g00028 682 ProSitePatterns Calcium-binding EGF-like domain signature. 285 310 IPR018097 GO:0005509
Pral5828g00028 682 CDD EGF_CA 285 319 - -
Pral5828g00028 682 FunFam Wall-associated receptor kinase 2 440 655 - -
Pral5828g00028 682 Gene3D Phosphorylase Kinase; domain 1 387 443 - -
Pral5828g00028 682 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 301 312 IPR000152 -
Pral5828g00028 682 FunFam Wall-associated receptor kinase 2 236 283 - -
Pral5828g00028 682 SUPERFAMILY Protein kinase-like (PK-like) 398 637 IPR011009 -
Pral5828g00028 682 Pfam Calcium-binding EGF domain 285 320 IPR001881 GO:0005509
Pral5828g00028 682 SMART serkin_6 339 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5828g00028 682 Pfam Protein tyrosine and serine/threonine kinase 386 633 IPR001245 GO:0004672|GO:0006468
Pral5828g00028 682 Gene3D Laminin 237 327 - -
Pral5828g00028 682 SMART egfca_6 285 328 IPR001881 GO:0005509
Pral5828g00028 682 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 435 637 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5828g00028 Pral-Chr5828 146529 149853 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5828g00028 6 636 Receptor kinase-like Gene Family AT1G21230 40.228 4.66e-159 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Pral5828g00028 PK_Tyr_Ser-Thr 8e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5828g00028 - - pcin:129293718 818.535