Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5828g00027 ATGTATTTGATGTACCAGAAGAGGAAGTTGGAGAAGCAAAAGGACAAATTCTTTCGACAAAATGGGGGCGCTGTTTTGCATCAGAAGCTCTCTGTAAAAGAAGGCTCCTCCCTCACAGCCAAGATCTTTACTGTTCAAGAATTGAAAAGGGCCACCAACAACTTCCACGACAGCTTAGTTATTGGCCGAGGCGGTTTTGGTACTGTTTACAAAGGAATTCTCCCAGACAACACTAGTGTCGCAATCAAGAAATCAAAACTGGCGGATCAAAGCCAAATTGAACAATTCATTAATGAGGTGATTATACTCTCCCAGATAAATCACAGGAATGTGGTCAAACTCCTAGGTTGTTGTCTGGAAACAGAGGTTCCTTTATTAGTTTATGAGTTTGTCAATAACGGTACCCTGTACGAATCCATACACAACAAAAGCAAAGCTTCTGTCTTTACTTGGGAAACCCGTTTGAGGATAGCAACAGAAGTGGCAGGAGCACTGTCGTATCTACACTCTGCTGCCTCCATACCCATCATCCACAGAGACGTCAAGTCCTCTAACATCCTTCTGGATGACACTTGCACAGCCAAAGTCTCTGATTTTGGAGCTTCCAGATTAGTTCCACTTGATCAAGTGGAGCTGGCCACAATGGTACAAGGTACTTTCGGATACTTGGACCCAGAATACATGCAAACGAACCAACTCACAGAAAAGAGCGATGTGTACAGTTTTGGAGTTGTAATTCTGGAACTCCTAACAGGAAGAAAGGCGCTGTTATTTGATGGGCCAGAAGAGGAGAGAAGCCTCGCAATGCACTTCCTATCATACTTGAACGAGGGTCGCCTGTTGGGAGTGGTTGAAAGAGGGATGGTGAATGATGGAAATAAGCAGACGGTGAAGGAAGTGGCTGAGCTTGCAGCGAGGTGCTTGAGACTTAAAGGAGAGGAGAGACCAGGCATGAAGGAAGTGGCTATGGAGTTAGAAGGAATAAGGATGATGGGGAAACATCCATGGATCAACAACGACGAGGAATCACGGTCATTACTTCGCCAGACGTCCTGTTTTACTGAATCTGTTGATAGCATGGTTTATAAGGACACTGGGTGGGATAGCATTACCGATCGTGTGCTGATTAATTTAGATGATGGAAGATTAAAAGAGGGAGGCCAGGTGTGTATTAAAGAGGAGCTCGCAGAGCTTCCTGTTGAGCTAAAAATGGAGACGATGCGACTTACAAAGCTTTGGTTCATTCCATTATTATTAGTAGCCGTAGCAGAAGCTCAATCCCTTGAAGGCTGCCTCCATAAATGTGGAGATGTACAGATTCCATATCCATTTGGCGTTGGCGTGCAACCTCGTACTGGTCGCAACTGCTTCTTCCAAGAATCATTCAATCTCACCTGCAATACCTCCACCTCCACATTATTCTACGGAGACCGCCCAGTTTCTAGCATATCTGTTCAAGGTGGTCATCTTGACATTTCCATGTCTGTCTCCAAGATTTGTTACAATCAACCTGGCGGCGCTGGCTCTGACAGTCACTATCTCGGAAACACTCCCTCTTTCGCCATTTCCAGCACCCAAAACAAGTTCGTAAGCGTTGGTTGCGACACTTTGGGCATAGTTCAGTTCGAAAACAATCGTACTTATTATGGTGGCTGCGTGACGCTCTGTGACGCGCCTCCTCAACAAGATTTGAATGATAAAACTTGTTCGGGGACTGGGTGTTGTCAGGTGGATATTCCTGTGGGGATGAGGAATATTAGTGTTGTGGCATCCGCCATCTTCAACCACTCAAACGTGTTGGATTTCAACAACTGCAGTTATGCTTTTGTTGCCAGACAGGGGTGGTTTAATTTCTCAGTTGATTATCTGCGAGACTTTCCCCTTGACACGGTCCCGCTTGTCCTAGATTGGACTGTTTCGGATGATACTTGTCAAGCTGCTTCGGCCACGTCAGATTATGCCTGCACCTCTAACACTGATTGTGTCGACTCCAATGATGGATTTGGGTACAACTGCAAATGCAAACCCGGTTTTGACGGAAACCCATACCATCCAGATGGATGCCACGATGTAGACGAATGCCAGGAATCGACCAACAACTGCATAAGTAAAGAAAATTGCCGCAACACGATCGGGTCTTTTGAGTGTTTTTGTCCACCTGGCTACACTGGCAACGGAACCACGGCCGGAGGATGCCAGCCACCCCTGTCAAAAAATCCCCTTACTATGGTCTTCATTGGTGTAAGTATAGGCTTGGCAGCTCTCTTTATGAGTTTGTCTTGGTTGTACTTGGTCTCCCAGAAGAGGAAGCTCATCAAGCAAAAGGAGAAATTTTTTCGTCAGAACGGCGGTTTCATACTGCAACAACGACTCTCTGGTGGACATGATCCCTCCCTTGCGGTTAAAATCTTTTCTGCTGAGGAATTGAAAAGGGCCACCAACAACTATCATGACAACTTGATCATTGGCCGAGGAGGTTTTGGTACTGTTTATAAAGGATTTCTCCCAGGCAAGAAAATCGTTGCAATCAAGAAATCCAAACTGATGAACCAGAGCCAAGTTGAACAATTCATCAACGAGGTGACCGTACTCTCCCAAATAAATCACCGTAATATAGTCAAGCTCCTAGGTTGTTGTCTGGAAACAGAAGTTCCTTTATTGGTCTACGAGTTTATTAATAACGGCACCCTCTTTGACTTAATGCACGACAAAAGAAAATCTTCTCCGGTCACTTGGGAAACCCGTTTGAGGATAGCATCAGAAGTAGCAGGGGCACTATCTTATCTACATTCCGCTGCTTCCATACCCATAGTTCACAGAGACATCAAGTCCGCTAACATTCTTCTAGACGAGAGCTTCACTGCCAAGGTTTCTGATTTTGGAGCTTCCAGATTGGTTCCGCTTGATCAAACAGGGTTAGCCACAATGGTACAAGGTACTTTCGGATATCTGGATCCGGAATACATGCAGACAAATCAGCTGACAGAGAAAAGTGACGTGTATAGTTTTGGGGTGGTGCTCGTAGAGCTGCTAACTGGGAAGAAAGCCGTTTCGTTTGAGAGGCCAGAAGAGGAAGTAAATCTGGCAATGCACTTCCTTACGTACTTGAATCAGGGTCACTTAGATGAAGTTGTTGAGAAAGGCGTGATGAATGATGAAAATAAGGAGAGGGTGAAAGAGGTGGCTATGCTTGCAGCAGGGTGCGTGAGACTGAGAGGAGAGGAGAGACCCAGCATGAAGGAAGTAGCAGGGGAGCTGGAGGGAATAAAGATGATGGGGAATCAGTTAGGGGTGAACAAAGAGCTGAATCTGGAGGAAGCTCAAACTTTGCTGGGCGAGACGTCCAATTTTACTGAATACGGTGATAGCATGATTCATGGAAACAGAGTTTGGGATAGCATTAAGGATCATGTTCTAATTAACTTGGACAGCGGTAGATGA 3441 0.4548 MYLMYQKRKLEKQKDKFFRQNGGAVLHQKLSVKEGSSLTAKIFTVQELKRATNNFHDSLVIGRGGFGTVYKGILPDNTSVAIKKSKLADQSQIEQFINEVIILSQINHRNVVKLLGCCLETEVPLLVYEFVNNGTLYESIHNKSKASVFTWETRLRIATEVAGALSYLHSAASIPIIHRDVKSSNILLDDTCTAKVSDFGASRLVPLDQVELATMVQGTFGYLDPEYMQTNQLTEKSDVYSFGVVILELLTGRKALLFDGPEEERSLAMHFLSYLNEGRLLGVVERGMVNDGNKQTVKEVAELAARCLRLKGEERPGMKEVAMELEGIRMMGKHPWINNDEESRSLLRQTSCFTESVDSMVYKDTGWDSITDRVLINLDDGRLKEGGQVCIKEELAELPVELKMETMRLTKLWFIPLLLVAVAEAQSLEGCLHKCGDVQIPYPFGVGVQPRTGRNCFFQESFNLTCNTSTSTLFYGDRPVSSISVQGGHLDISMSVSKICYNQPGGAGSDSHYLGNTPSFAISSTQNKFVSVGCDTLGIVQFENNRTYYGGCVTLCDAPPQQDLNDKTCSGTGCCQVDIPVGMRNISVVASAIFNHSNVLDFNNCSYAFVARQGWFNFSVDYLRDFPLDTVPLVLDWTVSDDTCQAASATSDYACTSNTDCVDSNDGFGYNCKCKPGFDGNPYHPDGCHDVDECQESTNNCISKENCRNTIGSFECFCPPGYTGNGTTAGGCQPPLSKNPLTMVFIGVSIGLAALFMSLSWLYLVSQKRKLIKQKEKFFRQNGGFILQQRLSGGHDPSLAVKIFSAEELKRATNNYHDNLIIGRGGFGTVYKGFLPGKKIVAIKKSKLMNQSQVEQFINEVTVLSQINHRNIVKLLGCCLETEVPLLVYEFINNGTLFDLMHDKRKSSPVTWETRLRIASEVAGALSYLHSAASIPIVHRDIKSANILLDESFTAKVSDFGASRLVPLDQTGLATMVQGTFGYLDPEYMQTNQLTEKSDVYSFGVVLVELLTGKKAVSFERPEEEVNLAMHFLTYLNQGHLDEVVEKGVMNDENKERVKEVAMLAAGCVRLRGEERPSMKEVAGELEGIKMMGNQLGVNKELNLEEAQTLLGETSNFTEYGDSMIHGNRVWDSIKDHVLINLDSGR 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5828g00027 1146 SMART serkin_6 55 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5828g00027 1146 SMART serkin_6 816 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5828g00027 1146 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Pral5828g00027 1146 FunFam Wall-associated receptor kinase 2 25 130 - -
Pral5828g00027 1146 Gene3D Transferase(Phosphotransferase) domain 1 131 351 - -
Pral5828g00027 1146 Gene3D Transferase(Phosphotransferase) domain 1 892 1107 - -
Pral5828g00027 1146 CDD EGF_CA 690 724 - -
Pral5828g00027 1146 CDD STKc_IRAK 61 328 - -
Pral5828g00027 1146 FunFam Wall-associated receptor kinase 2 786 891 - -
Pral5828g00027 1146 CDD STKc_IRAK 822 1089 - -
Pral5828g00027 1146 FunFam Wall-associated receptor kinase 2 131 348 - -
Pral5828g00027 1146 ProSiteProfiles EGF-like domain profile. 690 728 IPR000742 -
Pral5828g00027 1146 SMART egfca_6 690 733 IPR001881 GO:0005509
Pral5828g00027 1146 Gene3D Laminin 641 691 - -
Pral5828g00027 1146 FunFam Wall-associated receptor kinase 2 892 1109 - -
Pral5828g00027 1146 SUPERFAMILY Protein kinase-like (PK-like) 36 326 IPR011009 -
Pral5828g00027 1146 ProSitePatterns Protein kinases ATP-binding region signature. 822 845 IPR017441 GO:0005524
Pral5828g00027 1146 Gene3D Phosphorylase Kinase; domain 1 21 130 - -
Pral5828g00027 1146 Gene3D Phosphorylase Kinase; domain 1 789 891 - -
Pral5828g00027 1146 ProSiteProfiles Protein kinase domain profile. 55 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5828g00027 1146 SUPERFAMILY EGF/Laminin 690 725 - -
Pral5828g00027 1146 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 707 718 IPR000152 -
Pral5828g00027 1146 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 425 1090 IPR045274 GO:0007166
Pral5828g00027 1146 SUPERFAMILY Protein kinase-like (PK-like) 798 1087 IPR011009 -
Pral5828g00027 1146 SMART egf_5 643 689 IPR000742 -
Pral5828g00027 1146 SMART egf_5 693 733 IPR000742 -
Pral5828g00027 1146 ProSitePatterns Calcium-binding EGF-like domain signature. 690 716 IPR018097 GO:0005509
Pral5828g00027 1146 Pfam Wall-associated receptor kinase galacturonan-binding 431 487 IPR025287 GO:0030247
Pral5828g00027 1146 ProSitePatterns Serine/Threonine protein kinases active-site signature. 937 949 IPR008271 GO:0004672|GO:0006468
Pral5828g00027 1146 Pfam Calcium-binding EGF domain 690 732 IPR001881 GO:0005509
Pral5828g00027 1146 FunFam Fibrillin 2 685 730 - -
Pral5828g00027 1146 Gene3D Laminin 692 729 - -
Pral5828g00027 1146 ProSiteProfiles Protein kinase domain profile. 816 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5828g00027 1146 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Pral5828g00027 1146 Pfam Protein kinase domain 816 1082 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5828g00027 1146 Pfam Protein kinase domain 56 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5828g00027 Pral-Chr5828 139786 144644 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5828g00027 6 382 Receptor kinase-like Gene Family AT1G21230 53.968 2.17e-129 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Pral5828g00027 Pkinase 1.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5828g00027 - - gsj:114381577 1254.2