Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5828g00025 ATGGCGTCGTCATCGAATTCACCATGTGCGGCCTGCAAGTTTCTGCGGCGAAAGTGCCAACCAGAGTGCGTGTTTGCACCCTACTTCCCCCCAGATCAGCCACAGAAATTCGCGAATGTGCACAAAGTATTTGGAGCGAGCAATGTCACCAAGCTCCTGAACGAGTTACACCCCCACCAGCGTGAAGACGCCGTCAATTCTCTGGCCTACGAGGCCGACATGCGCCTCCGTGACCCCGTGTACGGCTGCGTGGGAGTGATCTCTCTCCTGCAGCACCAGCTCCGGCAGCTGCAAATGGACCTCACCTGCGCAAAGTCGGAGCTGTCCAGGTACCAGACCTTGGGCATCACCGGCCACAGCCTCATCGCGGCTCACCACCAGGCCCAGAATATGGGCATGAACCTGATCGGCGACCACCATCACTACCACCACCAGTTCTTCCCTCGAGACCATCATCAGTCCTCCATGATCAGGACATTTGATGCGGGTAACAACTATGACGCTGGTCTCCTGTCCATGAACGTCTCTGCAAGCATAGGCCAGCTCAATCAGTTTCCGCATCAGCACCCTCGAGCTGCTGCCGGGGACGATCGTCGAACTATTGATCCCTCTTAG 615 0.5707 MASSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLTCAKSELSRYQTLGITGHSLIAAHHQAQNMGMNLIGDHHHYHHQFFPRDHHQSSMIRTFDAGNNYDAGLLSMNVSASIGQLNQFPHQHPRAAAGDDRRTIDPS 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5828g00025 204 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Pral5828g00025 204 Coils Coil 87 114 - -
Pral5828g00025 204 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Pral5828g00025 204 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5828g00025 Pral-Chr5828 134410 135070 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5828g00025 2 204 AS2 family AT1G65620 71.429 5.11e-92 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pral5828g00025 LOB 2.7e-43 No_clan