Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5828g00022 ATGGAAACTGAGGATGGAACAAGCAACGGGGACAACACAGAATGTTCTGAAGCAGTTCAGTGCCTGAAGAGTGAAGCTGTAAATAATGGGGTTGCAGATAGCAATGATGTTAAGAAAGGGATTCAGCGCTTTAATTGTGAAGCTGTGAATAATGGGGTGGTTATTGCAGACAGGAATGGTGCTGCTCAAGGGGACTGTGGCGTAGTTGAAAGCTTTCGAACTTACAAGAGACGTAAGCATGTAAAGTTGAATTCAGAAAGGAAAGCTCAAGAAGTTTGCAGAACATACTCAGAAGCTGCAAGTCACATAGCTGGCCAGGAAACTTGTAGAATTGACAAAGTTGGACAAGATTACTCTCCACACTTAGAACTGACGTCTCATAGATTACGGAAGAATCTTAATGGGCATGCAAATGTCTTTCGCAATGGATCTTGTAACGAGTCGGATGCTCCTGATGCAAATGAGATGTGCCAGCGTGTACTATGTAATGTCTTAGTCTCTGAGAAATTCAGTTCGTTATGTAAGGTGCTACTAGAAAATTTCAAAGGAATGAAGCCTGAAACTGTATTTGACTTCAGTGTCATAAACTCAAGGTTGAAAGAGCAAGCTTATGAACAGTCGCCCACACTTTTTTCGTCAGATATTCAACAGGTTTGGCGAAAACTTCAAGACGCCGGTAATGAGATTGTTTCTCTTGCCAAGGGCCTTTCAAACATTTCGAGAACTTATTGTGAGCAGGCTGGAGTTTCCGTGCATGGCGCATTCAAAGATGGAAAACTGGAGTTCTGTAACCAGGAATCTGATTCTCACATGAAACCGGAGCAGACAGAAGACTGTGGCGTGTATAAGATGTGCACTTGCAGGCATTGTGGAAACAGAGCAGATGGGAAAGACTGTTTGGTTTGTGATTCATGCGAGGAGATGTTCCATATCTCCTGCATTGAACCTCCTGTCAAAGAGATACCCCACAAGAGCTGGTACTGTGTCAAATGCACTGCCATTGGAATTGGATCTCCACATGAAAACTGTGTAGTATGTGAAAGGTTGAATGACTCCAAGACCCTGAACTTTGATGAAAACTCCCCTGTAAATGATGAAACAATTAATGAATTGGAAGAGAATTCAAATTGCACCTATGATGGGGCTCAAGCATCTAGAAGGGGGAAAATCGACATGATCTGCAAAGTTTGTAAAAATGAGGTGGATGGTGAAAGAATTAAAATCTGTGGTCACTCTGCCTGCGATGGTAAGTACTACCATGTAAGATGTTTGACAAGTAAACAGTTGACATCATATGGTCCCTGTTGGTACTGCCCTTCTTGCTTATGCCAAGTTTGTCTCACTGATAAAGATGATAATAAGATTGTTATCTGTGATGGATGTGATGATGCATACCACATATATTGCATGAAACCTCCCCGAGCTGCTATTCCCAAAGGAAAATGGTTCTGCATAAAATGTCATACAGGGTTACGAGCAATACACCGGGCAAAAAAGGTATATGAGAGTAAAAAGCAGAGAAAGGCAAGTGAAGATGGTTCAAAACCAGTGGACAGATTTGAAAAAAATTGGAATGGTAAACACGGAAGAGATTTGGATAAAGGTGGAGGAATGGACATGCTTTTAACTGCAGCCAATACTTTGAATTTGGAAGAGGACTTGGCTGCATTTGGGATGTAG 1680 0.4179 METEDGTSNGDNTECSEAVQCLKSEAVNNGVADSNDVKKGIQRFNCEAVNNGVVIADRNGAAQGDCGVVESFRTYKRRKHVKLNSERKAQEVCRTYSEAASHIAGQETCRIDKVGQDYSPHLELTSHRLRKNLNGHANVFRNGSCNESDAPDANEMCQRVLCNVLVSEKFSSLCKVLLENFKGMKPETVFDFSVINSRLKEQAYEQSPTLFSSDIQQVWRKLQDAGNEIVSLAKGLSNISRTYCEQAGVSVHGAFKDGKLEFCNQESDSHMKPEQTEDCGVYKMCTCRHCGNRADGKDCLVCDSCEEMFHISCIEPPVKEIPHKSWYCVKCTAIGIGSPHENCVVCERLNDSKTLNFDENSPVNDETINELEENSNCTYDGAQASRRGKIDMICKVCKNEVDGERIKICGHSACDGKYYHVRCLTSKQLTSYGPCWYCPSCLCQVCLTDKDDNKIVICDGCDDAYHIYCMKPPRAAIPKGKWFCIKCHTGLRAIHRAKKVYESKKQRKASEDGSKPVDRFEKNWNGKHGRDLDKGGGMDMLLTAANTLNLEEDLAAFGM 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5828g00022 559 ProSitePatterns Zinc finger PHD-type signature. 285 331 IPR019786 -
Pral5828g00022 559 Gene3D - 175 334 - -
Pral5828g00022 559 SUPERFAMILY FYVE/PHD zinc finger 285 334 IPR011011 -
Pral5828g00022 559 MobiDBLite consensus disorder prediction 504 531 - -
Pral5828g00022 559 ProSiteProfiles Zinc finger PHD-type profile. 284 334 IPR019787 -
Pral5828g00022 559 FunFam PHD finger protein EHD3 isoform A 175 335 - -
Pral5828g00022 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 391 493 IPR013083 -
Pral5828g00022 559 SUPERFAMILY FYVE/PHD zinc finger 442 492 IPR011011 -
Pral5828g00022 559 SMART PHD_3 393 442 IPR001965 -
Pral5828g00022 559 SMART PHD_3 445 488 IPR001965 -
Pral5828g00022 559 SMART PHD_3 286 332 IPR001965 -
Pral5828g00022 559 ProSiteProfiles Zinc finger PHD-type profile. 440 490 IPR019787 -
Pral5828g00022 559 ProSiteProfiles Zinc finger RING-type profile. 394 441 IPR001841 -
Pral5828g00022 559 PANTHER OS02G0192300 PROTEIN 190 359 - -
Pral5828g00022 559 Pfam PHD-finger 443 488 IPR019787 -
Pral5828g00022 559 Pfam PHD-finger 287 332 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5828g00022 Pral-Chr5828 88293 94622 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5828g00022 442 509 C2H2 Transcription Factor Family AT3G01460 41.176 2.11e-13 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral5828g00022 PHD 4e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5828g00022 - - gmx:100795906 646.351