Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5828g00021 ATGGAAACTGAGGATGGAACAAGCAACGGGGACAACACAGAATGTTCTGAAGCAGTTCAGTGCCTGAAGAGTGAAGCTGTAAATAATGGGGTTGCAGATAGCAATGATGTTAAGAAAGGGATTCAGCGCTTTAATTGTGAAGCTGTGAATAATGGGGTGGTTATTGCAGACAGGAATGGTGCTGCTCAAGGGGACTGTGGCGTAGTTGAAAGCTTTCGAACTTACAAGAGACGTAAGCATGTAAAGTTGAATTCAGAAAGGAAAGCTCAAGAAGTTTGCAGAACATACTCAGAAGCTGCAAGTCACATAGCTGGCCAGGCTGTAAAGAAACCATGTAATGTAGCCATAGGAAATACTTCGGATAAGCATTCACATGCACATTGGGGAAATGTTGTACTAATGCAGTTGTATCAGTCATTAGGCAATGATAAAGGTGGCATAGAAGAGTGCATGAGGGAAGCTCTCATGCGCTATGCTAAAATTAGTTGTGCCACTACTTTAAAGGAAACTTGTAGAATTGACAAAGTTGGACAAGATTACTCTCCACACTTAGAACTGACGTCTCATAGATTACGGAAGAATCTTAATGGGCATGCAAATGTCTTTCGCAATGGATCTTGTAACGAGTCGGATGCTCCTGATGCAAATGAGATGTGCCAGCGTGTACTATGTAATGTCTTAGTCTCTGAGAAATTCAGTTCGTTATGTAAGGTGCTACTAGAAAATTTCAAAGGAATGAAGCCTGAAACTGTATTTGACTTCAGTGTCATAAACTCAAGGTTGAAAGAGCAAGCTTATGAACAGTCGCCCACACTTTTTTCGTCAGATATTCAACAGGTTTGGCGAAAACTTCAAGACGCCGGTAATGAGATTGTTTCTCTTGCCAAGGGCCTTTCAAACATTTCGAGAACTTATTGTGAGCAGGCTGGAGTTTCCGTGCATGGCGCATTCAAAGATGGAAAACTGGAGGAATCTGATTCTCACATGAAACCGGAGCAGACAGAAGACTGTGGCGTGTATAAGATGTGCACTTGCAGGCATTGTGGAAACAGAGCAGATGGGAAAGACTGTTTGGTTTGTGATTCATGCGAGGAGATGTTCCATATCTCCTGCATTGAACCTCCTGTCAAAGAGATACCCCACAAGAGCTGGTACTGTGTCAAATGCACTGCCATTGGAATTGGATCTCCACATGAAAACTGTGTAGTATGTGAAAGGTTGAATGACTCCAAGACCCTGAACTTTGATGAAAACTCCCCTGTAAATGATGAAACAATTAATGAATTGGAAGAGAATTCAAATTGCACCTATGATGGGGCTCAAGCATCTAGAAGGGGGAAAATCGACATGATCTGCAAAGTTTGTAAAAATGAGGTGGATGGTGAAAGAATTAAAATCTGTGGTCACTCTGCCTGCGATGGTAAGTACTACCATGTAAGATGTTTGACAAGTAAACAGTTGACATCATATGGTCCCTGTTGGTACTGCCCTTCTTGCTTATGCCAAGTTTGTCTCACTGATAAAGATGATAATAAGATTGTTATCTGTGATGGATGTGATGATGCATACCACATATATTGCATGAAACCTCCCCGAGCTGCTATTCCCAAAGGAAAATGGTTCTGCATAAAATGTCATACAGGGTTACGAGCAATACACCGGGCAAAAAAGGTATATGAGAGTAAAAAGCAGAGAAAGGCAAGTGAAGATGGTTCAAAACCAGTGGACAGATTTGAAAAAAATTGGAATGGTAAACACGGAAGAGATTTGGATAAAGGTGGAGGAATGGACATGCTTTTAACTGCAGCCAATACTTTGAATTTGGAAGAGGACTTGGCTGCATTTGGGATGTAG 1854 0.4159 METEDGTSNGDNTECSEAVQCLKSEAVNNGVADSNDVKKGIQRFNCEAVNNGVVIADRNGAAQGDCGVVESFRTYKRRKHVKLNSERKAQEVCRTYSEAASHIAGQAVKKPCNVAIGNTSDKHSHAHWGNVVLMQLYQSLGNDKGGIEECMREALMRYAKISCATTLKETCRIDKVGQDYSPHLELTSHRLRKNLNGHANVFRNGSCNESDAPDANEMCQRVLCNVLVSEKFSSLCKVLLENFKGMKPETVFDFSVINSRLKEQAYEQSPTLFSSDIQQVWRKLQDAGNEIVSLAKGLSNISRTYCEQAGVSVHGAFKDGKLEESDSHMKPEQTEDCGVYKMCTCRHCGNRADGKDCLVCDSCEEMFHISCIEPPVKEIPHKSWYCVKCTAIGIGSPHENCVVCERLNDSKTLNFDENSPVNDETINELEENSNCTYDGAQASRRGKIDMICKVCKNEVDGERIKICGHSACDGKYYHVRCLTSKQLTSYGPCWYCPSCLCQVCLTDKDDNKIVICDGCDDAYHIYCMKPPRAAIPKGKWFCIKCHTGLRAIHRAKKVYESKKQRKASEDGSKPVDRFEKNWNGKHGRDLDKGGGMDMLLTAANTLNLEEDLAAFGM 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5828g00021 617 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 450 551 IPR013083 -
Pral5828g00021 617 PANTHER OS02G0192300 PROTEIN 252 417 - -
Pral5828g00021 617 ProSiteProfiles Zinc finger RING-type profile. 452 499 IPR001841 -
Pral5828g00021 617 ProSiteProfiles Zinc finger PHD-type profile. 342 392 IPR019787 -
Pral5828g00021 617 Pfam PHD-finger 345 390 IPR019787 -
Pral5828g00021 617 Pfam PHD-finger 501 546 IPR019787 -
Pral5828g00021 617 FunFam PHD finger protein EHD3 isoform A 237 393 - -
Pral5828g00021 617 Gene3D - 237 392 - -
Pral5828g00021 617 MobiDBLite consensus disorder prediction 562 589 - -
Pral5828g00021 617 SUPERFAMILY FYVE/PHD zinc finger 335 390 IPR011011 -
Pral5828g00021 617 ProSiteProfiles Zinc finger PHD-type profile. 498 548 IPR019787 -
Pral5828g00021 617 SMART PHD_3 344 390 IPR001965 -
Pral5828g00021 617 SMART PHD_3 451 500 IPR001965 -
Pral5828g00021 617 SMART PHD_3 503 546 IPR001965 -
Pral5828g00021 617 SUPERFAMILY FYVE/PHD zinc finger 500 550 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5828g00021 Pral-Chr5828 88293 94622 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5828g00021 500 567 C2H2 Transcription Factor Family AT3G01460 41.176 2.27e-13 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral5828g00021 PHD 4.6e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5828g00021 - - gmx:100795906 763.451