Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5828g00020 ATGGAAACTGAGGATGGAACAAGCAACGGGGACAACACAGAATGTTCTGAAGCAGTTCAGTGCCTGAAGAGTGAAGCTGTAAATAATGGGGTTGCAGATAGCAATGATGTTAAGAAAGGGATTCAGCGCTTTAATTGTGAAGCTGTGAATAATGGGGTGGTTATTGCAGACAGGAATGGTGCTGCTCAAGGGGACTGTGGCGTAGTTGAAAGCTTTCGAACTTACAAGAGACGTAAGCATGTAAAGTTGAATTCAGAAAGGAAAGCTCAAGAAGTTTGCAGAACATACTCAGAAGCTGCAAGTCACATAGCTGGCCAGGCTGTAAAGAAACCATGTAATGTAGCCATAGGAAATACTTCGGATAAGCATTCACATGCACATTGGGGAAATGTTGTACTAATGCAGTTGTATCAGTCATTAGGCAATGATAAAGGTGGCATAGAAGAGTGCATGAGGGAAGCTCTCATGCGCTATGCTAAAATTAGTTGTGCCACTACTTTAAAGGAAACTTGTAGAATTGACAAAGTTGGACAAGATTACTCTCCACACTTAGAACTGACGTCTCATAGATTACGGAAGAATCTTAATGGGCATGCAAATGTCTTTCGCAATGGATCTTGTAACGAGTCGGATGCTCCTGATGCAAATGAGATGTGCCAGCGTGTACTATGTAATGTCTTAGTCTCTGAGAAATTCAGTTCGTTATGTAAGGTGCTACTAGAAAATTTCAAAGGAATGAAGCCTGAAACTGTATTTGACTTCAGTGTCATAAACTCAAGGTTGAAAGAGCAAGCTTATGAACAGTCGCCCACACTTTTTTCGTCAGATATTCAACAGGTTTGGCGAAAACTTCAAGACGCCGGTAATGAGATTGTTTCTCTTGCCAAGGGCCTTTCAAACATTTCGAGAACTTATTGTGAGCAGGCTGGAGTTTCCGTGCATGGCGCATTCAAAGATGGAAAACTGGAGTTCTGTAACCAGGAATCTGATTCTCACATGAAACCGGAGCAGACAGAAGACTGTGGCGTGTATAAGATGTGCACTTGCAGGCATTGTGGAAACAGAGCAGATGGGAAAGACTGTTTGGTTTGTGATTCATGCGAGGAGATGTTCCATATCTCCTGCATTGAACCTCCTGTCAAAGAGATACCCCACAAGAGCTGGTACTGTGTCAAATGCACTGCCATTGGAATTGGATCTCCACATGAAAACTGTGTAGTATGTGAAAGGTTGAATGACTCCAAGACCCTGAACTTTGATGAAAACTCCCCTGTAAATGATGAAACAATTAATGAATTGGAAGAGAATTCAAATTGCACCTATGATGGGGCTCAAGCATCTAGAAGGGGGAAAATCGACATGATCTGCAAAGTTTGTAAAAATGAGGTGGATGGTGAAAGAATTAAAATCTGTGGTCACTCTGCCTGCGATGGTAAGTACTACCATGTAAGATGTTTGACAAGTAAACAGTTGACATCATATGGTCCCTGTTGGTACTGCCCTTCTTGCTTATGCCAAGTTTGTCTCACTGATAAAGATGATAATAAGATTGTTATCTGTGATGGATGTGATGATGCATACCACATATATTGCATGAAACCTCCCCGAGCTGCTATTCCCAAAGGAAAATGGTTCTGCATAAAATGTCATACAGGGTTACGAGCAATACACCGGGCAAAAAAGGTATATGAGAGTAAAAAGCAGAGAAAGGCAAGTGAAGATGGTTCAAAACCAGTGGACAGATTTGAAAAAAATTGGAATGGTAAACACGGAAGAGATTTGGATAAAGGTGGAGGAATGGACATGCTTTTAACTGCAGCCAATACTTTGAATTTGGAAGAGGACTTGGCTGCATTTGGGATGTAG 1866 0.4159 METEDGTSNGDNTECSEAVQCLKSEAVNNGVADSNDVKKGIQRFNCEAVNNGVVIADRNGAAQGDCGVVESFRTYKRRKHVKLNSERKAQEVCRTYSEAASHIAGQAVKKPCNVAIGNTSDKHSHAHWGNVVLMQLYQSLGNDKGGIEECMREALMRYAKISCATTLKETCRIDKVGQDYSPHLELTSHRLRKNLNGHANVFRNGSCNESDAPDANEMCQRVLCNVLVSEKFSSLCKVLLENFKGMKPETVFDFSVINSRLKEQAYEQSPTLFSSDIQQVWRKLQDAGNEIVSLAKGLSNISRTYCEQAGVSVHGAFKDGKLEFCNQESDSHMKPEQTEDCGVYKMCTCRHCGNRADGKDCLVCDSCEEMFHISCIEPPVKEIPHKSWYCVKCTAIGIGSPHENCVVCERLNDSKTLNFDENSPVNDETINELEENSNCTYDGAQASRRGKIDMICKVCKNEVDGERIKICGHSACDGKYYHVRCLTSKQLTSYGPCWYCPSCLCQVCLTDKDDNKIVICDGCDDAYHIYCMKPPRAAIPKGKWFCIKCHTGLRAIHRAKKVYESKKQRKASEDGSKPVDRFEKNWNGKHGRDLDKGGGMDMLLTAANTLNLEEDLAAFGM 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5828g00020 621 PANTHER OS02G0192300 PROTEIN 252 421 - -
Pral5828g00020 621 ProSiteProfiles Zinc finger PHD-type profile. 502 552 IPR019787 -
Pral5828g00020 621 FunFam PHD finger protein EHD3 isoform A 237 397 - -
Pral5828g00020 621 Gene3D - 237 396 - -
Pral5828g00020 621 ProSiteProfiles Zinc finger RING-type profile. 456 503 IPR001841 -
Pral5828g00020 621 SMART PHD_3 507 550 IPR001965 -
Pral5828g00020 621 SMART PHD_3 348 394 IPR001965 -
Pral5828g00020 621 SMART PHD_3 455 504 IPR001965 -
Pral5828g00020 621 ProSitePatterns Zinc finger PHD-type signature. 347 393 IPR019786 -
Pral5828g00020 621 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 453 555 IPR013083 -
Pral5828g00020 621 ProSiteProfiles Zinc finger PHD-type profile. 346 396 IPR019787 -
Pral5828g00020 621 MobiDBLite consensus disorder prediction 566 593 - -
Pral5828g00020 621 Pfam PHD-finger 349 394 IPR019787 -
Pral5828g00020 621 Pfam PHD-finger 505 550 IPR019787 -
Pral5828g00020 621 SUPERFAMILY FYVE/PHD zinc finger 344 394 IPR011011 -
Pral5828g00020 621 SUPERFAMILY FYVE/PHD zinc finger 504 554 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5828g00020 Pral-Chr5828 88293 94622 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5828g00020 504 571 C2H2 Transcription Factor Family AT3G01460 41.176 2.34e-13 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral5828g00020 PHD 4.6e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5828g00020 - - gmx:100810450 774.237