Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5828g00018 ATGGAAACTGAGGATGGAACAAGCAACGGGGACAACACAGAATGTTCTGAAGCAGTTCAGTGCCTGAAGAGTGAAGCTGTAAATAATGGGGTTGCAGATAGCAATGATGTTAAGAAAGGGATTCAGCGCTTTAATTGTGAAGCTGTGAATAATGGGGTGGTTATTGCAGACAGGAATGGTGCTGCTCAAGGGGACTGTGGCGTAGTTGAAAGCTTTCGAACTTACAAGAGACGTAAGCATGTAAAGTTGAATTCAGAAAGGAAAGCTCAAGAAGTTTGCAGAACATACTCAGAAGCTGCAAGTCACATAGCTGGCCAGGCTGTAAAGAAACCATGTAATGTAGCCATAGGAAATACTTCGGATAAGCATTCACATGCACATTGGGGAAATGTTGTACTAATGCAGTTGTATCAGTCATTAGGCAATGATAAAGGTGGCATAGAAGAGTGCATGAGGGAAGCTCTCATGCGCTATGCTAAAATTAGTTGTGCCACTACTTTAAAGGAAACTTGTAGAATTGACAAAGTTGGACAAGATTACTCTCCACACTTAGAACTGACGTCTCATAGATTACGGAAGAATCTTAATGGGCATGCAAATGTCTTTCGCAATGGATCTTGTAACGAGTCGGATGCTCCTGATGCAAATGAGATGTGCCAGCGTGTACTATGTAATGTCTTAGTCTCTGAGAAATTCAGTTCGTTATGTAAGGTGCTACTAGAAAATTTCAAAGGAATGAAGCCTGAAACTGTATTTGACTTCAGTGTCATAAACTCAAGGTTGAAAGAGCAAGCTTATGAACAGTCGCCCACACTTTTTTCGTCAGATATTCAACAGGTTTGGCGAAAACTTCAAGACGCCGGTAATGAGATTGTTTCTCTTGCCAAGGGCCTTTCAAACATTTCGAGAACTTATTGTGAGCAGGCTGGAGTTTCCGTGCATGGCGCATTCAAAGATGGAAAACTGGAGTTCTGTAACCAGGAATCTGATTCTCACATGAAACCGGAGCAGACAGAAGACTGTGGCGTGTATAAGATGTGCACTTGCAGGCATTGTGGAAACAGAGCAGATGGGAAAGACTGTTTGGTTTGTGATTCATGCGAGGAGATGTTCCATATCTCCTGCATTGAACCTCCTGTCAAAGAGATACCCCACAAGAGCTGGTACTGTGTCAAATGCACTGCCATTGGAATTGGATCTCCACATGAAAACTGTGTAGTATGTGAAAGGTTGAATGACTCCAAGACCCTGAACTTTGATGAAAACTCCCCTGTAAATGATGAAACAATTAATGAATTGGAAGAGAATTCAAATTGCACCTATGATGGGGCTCAAGCATCTAGAAGGGGGAAAATCGACATGATCTGCAAAGTTTGTAAAAATGAGGTGGATGGTGAAAGAATTAAAATCTGTGGTCACTCTGCCTGCGATGACAGGATAATAGAGGGACTTTTGAAGGCAGCTAGCATCATCAGAAACTATGATGAGCGGAGTCCTAGTAAATGGAGGAGTTATCAATTGACAGATGCGATTGCTATTAAATGGCTGCTTACTTTGTTCCATGTGGATCATACCATTTTGGGTTGGGATGTTCCTTAG 1599 0.4209 METEDGTSNGDNTECSEAVQCLKSEAVNNGVADSNDVKKGIQRFNCEAVNNGVVIADRNGAAQGDCGVVESFRTYKRRKHVKLNSERKAQEVCRTYSEAASHIAGQAVKKPCNVAIGNTSDKHSHAHWGNVVLMQLYQSLGNDKGGIEECMREALMRYAKISCATTLKETCRIDKVGQDYSPHLELTSHRLRKNLNGHANVFRNGSCNESDAPDANEMCQRVLCNVLVSEKFSSLCKVLLENFKGMKPETVFDFSVINSRLKEQAYEQSPTLFSSDIQQVWRKLQDAGNEIVSLAKGLSNISRTYCEQAGVSVHGAFKDGKLEFCNQESDSHMKPEQTEDCGVYKMCTCRHCGNRADGKDCLVCDSCEEMFHISCIEPPVKEIPHKSWYCVKCTAIGIGSPHENCVVCERLNDSKTLNFDENSPVNDETINELEENSNCTYDGAQASRRGKIDMICKVCKNEVDGERIKICGHSACDDRIIEGLLKAASIIRNYDERSPSKWRSYQLTDAIAIKWLLTLFHVDHTILGWDVP 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5828g00018 532 Pfam PHD-finger 349 394 IPR019787 -
Pral5828g00018 532 ProSitePatterns Zinc finger PHD-type signature. 347 393 IPR019786 -
Pral5828g00018 532 Gene3D - 237 396 - -
Pral5828g00018 532 FunFam PHD finger protein EHD3 isoform A 237 397 - -
Pral5828g00018 532 ProSiteProfiles Zinc finger PHD-type profile. 346 396 IPR019787 -
Pral5828g00018 532 PANTHER OS02G0192300 PROTEIN 252 421 - -
Pral5828g00018 532 SMART PHD_3 348 394 IPR001965 -
Pral5828g00018 532 SUPERFAMILY FYVE/PHD zinc finger 344 395 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5828g00018 Pral-Chr5828 88293 94916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5828g00018 252 394 C2H2 Transcription Factor Family AT3G01460 30.128 3.19e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral5828g00018 PHD 8.4e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5828g00018 - - gmx:100810450 561.607