Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5828g00009 ATGGGGAGAGGTAAGATTGAGATCAAGAGAATTGAGAACTCAAGCAACAGGCAAGTGACCTACTCCAAGAGGAAGAGTGGGATCCTGAAGAAGGCGAAGGAAATTACTGTTCTATGCGATGCCCAAGTTTCCCTTATTATCTTTGCTGCATCTGGAAAGATGCATGAATACATCAGCCCTTCAACCACGTTGATCGACATCCTAGAAAGATATCACAAAACGTCTGGAAAGAGGCTCTGGGACGCTAAGCATGAGGACTTAAACAACGAAATTGATAGGCTCAAGAAAGAGAACGACAACATGCAGATTGAGCTCAGGCACTTGAAGGGAGAGGATGTGAACACGCTTAATTACAAGGAGCTGATGGCCTTAGAGGACGCCTTAGAATGTGGCCTCGCTGGTATACGCGAGAGACAGATGGAGATTTACAGGGCATGCAGAAGAAATGGCAAGATCTTGGAGGAAGAGAACAGGGAGCTCAACTTTATACTGCAACAACGTCTGGCAATGGAAGGAGCGAGAGAATTGGAGAATGGGTTTGATCAGAGCGTGAGGGAGTTCCATTCACAACTGCCATTCGCCTTCCGTGTGCAGCCTATGCAGCCAAATCTTCACGAGAGGATGTGA 627 0.4689 MGRGKIEIKRIENSSNRQVTYSKRKSGILKKAKEITVLCDAQVSLIIFAASGKMHEYISPSTTLIDILERYHKTSGKRLWDAKHEDLNNEIDRLKKENDNMQIELRHLKGEDVNTLNYKELMALEDALECGLAGIRERQMEIYRACRRNGKILEEENRELNFILQQRLAMEGARELENGFDQSVREFHSQLPFAFRVQPMQPNLHERM 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5828g00009 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral5828g00009 208 Pfam K-box region 82 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5828g00009 208 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Pral5828g00009 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 174 - -
Pral5828g00009 208 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral5828g00009 208 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Pral5828g00009 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral5828g00009 208 Coils Coil 77 111 - -
Pral5828g00009 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral5828g00009 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral5828g00009 208 Gene3D - 13 106 IPR036879 GO:0003677|GO:0046983
Pral5828g00009 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral5828g00009 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral5828g00009 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5828g00009 Pral-Chr5828 41174 44111 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5828g00009 1 143 MADS-box Gene Family AT5G20240 65.734 8.92e-66 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral5828g00009 K-box 5.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5828g00009 K09264 - gmx:100817554 362.459