Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5828g00003 ATGCTGCGGACGAATGCATTCGAAGGCGCGGATGTGTTCATGTCGCGGAACCTCGTGCCGCCGGAAGTCTTCGACGCACTTCACGACGCGCTTAAGAATAACGGCGCGCGTGTCCACCTTTGCTGCGATCCTTCGCGCAATGGGCCGCACGACTATCATATCATATCTCACGATCATGAGAAACTGGAGGATCTTAAAGCCAGGGGTTGTAATCTGCTTGGTCCTCAGTGTGTGCTTTCATGTGCAAAAGAACAAAGACCCCTGCCTAAACAGGGTTTTACTTGTTGCCTTGCCATGGATGGTGTCAAAGTACTTGCATCTGGCTTTGATATGGATGAGAAGATGAAGATAGGAGAGTTAGTAAATTCTATGGGAGGAATTCTGCATACTAAAGCATCACTGGATGTAAACTTTGTGATTGTGAAAAATGTTTTAGCTGCAAAGTACAAGTGGGCTTTGAATATGCTGAAGAAACCAATTGTCACTCCTAATTGGTTAAAGCAATGCTCTATTGAGCATCGCATTGTTCCTCAAGAGTCATACAGGATTCTTCCCTTTTCTGGGTTGACAATTTGTGTTACCCGAATTCCAGCAGATGAGCGCAGGAAAATTGAGATGCTTATTGTACAGAATGGTGGGAAATACTCTGCAGAGCTGACAAAGAAGTGCACACATTTGATTTCTGATGCTCCTGAAGGTGACAAATATAAGGTGGCAAAACGATGGGGTCACATCCATATTGTGACAAAGAAATGGTTTGATCAGTCTATTGCCAGGAGGGCATGTCTGAATGAGGAGTCCTACCCTGTTCAGCATGGACCTGTATCTTCACAAAGAATGTCCGGGGATAATTTAACAGCACAACATAGTCAAGAGAGGGAAAGTGGGAAATGGCAATCAGCAGCAGCATCTGGACCTGCAGATTCATGTATGCCTGCTGTTTCCTATGCTGAGCCTGTGGACGGAGATCCAGATGCTACACAGTCAGAAAACACTTCTGCCGCCATTTTAGATGTTCCTATCTTTGTTAATGGGACAGATCCTGAAGCACGTCCAGTGCAACCCAAAAAGGAACCAAACCTTGACAGTGCTGTAGCCAGAGATTCTGAATCTGATGATAATGACCTGTACTTATCAGAGTGCAGAATATCACTTGTTGGCTTTGAAGCCTCTGAAATGCGTAAGCTAGTTAATTTGATTCATAAGGGAGGAGGGTCCAGATATATGTCGCTTAATGACAAGTTGACACACATAGTTGTTGGAACCCCGTCAGAAATAGAAAAGAAGGATGTAAGGAGCCTTGCTGCTCTGGGTATCATCTATGTTGTTAAAACTGCATGGCTTGAAGATTGTGACCGTGAAAAGAAAGAAGTTCCTGTTCTGAAGAGACATATTGCGCAAGATCTTCTTCTTCCAAAAGGTTCCACATCTTTTGTGAAAGGAGTTGTAACTGGCATTATGACCATGAATAAAGGTAAAGGCTTCAGCACTCATCAGAGCCTGCAGGCTGATCAGGCGATAACTAGTATGGACTCTCGAGTTGTAATGCCATTGTCCGTGGAGAAAAGAGAAGAAAAGAAGCTGGAGATCGATGTGATCAATCAGTCCAGTCTTAAATCAATGGACAAGCCGACAAAGCAAATGCAACTTCCTGTCGTTAATAATAAAATGAAGGGTCAAAAGAAGATGCATAATGACTCTTCTCAGTGTGTGAAGTCATCAACAGTTTTCTGGGGGAGGACGTTTTGTTTTTCAAATTCTTTTCCTGAAGAGAGAAGAGATGAGATTATTCAATGGATAAGTCAAGGAAAAGGAGAGGTAGTAAATGGGCACAGAAAACAGAATGCCCACTATACTATTGAGTGCCACGGTGTAACAAGGAGGTTGGAAGAAATTTCCCCGACTACGTATATCTCCAGTCATTGGATACGATCTTGTTTAGAGAATGACTGCTTGCTGGATGTTGATAGTCACATTCTTTATTCTCCACTCCCTTGCTGTATACCTTTGCCTGGGTTTGAAAGCTTTCGGTTTTGTGTTTCTCAATATGAGGGGAAAGACAGAATGCTGCTAAGGAACTTGTGCTTTGTTCTCGGAGCTACATTTGTGGAGAAGTTGACAAAGAAAGTCACACATTTATTGTGTAAATTCATCAATGGGCCTAAGTATGAGGCTGCTTGTAAGTGGGGGATCCAGGCAGTTACCTCTGAATGGATATTTGAATGTGTCAAACAGAATAAAGTTGTTGGTGTTGATCAATTTTTACCCAAAGAAGTTTCTGTTCAAGATCATGAGAACCAGGAGGCAGGAGTTTTTACTGTGAGTCAATTTCCTAACCCGGCTGAAAGCATAGGTGGAGACAGCTCTGCCCAGTTTTCAAGTCGATCACAAAATTTGAGAAACATACCAAATCAAAATATGGCTAGTCAAGTCGACAATTATGAGGTTAATGCTAAAATATCAAGTGTTTACTGCAAAAGGGCAAGGCTTTTGGAAGAGTCTGGCCTGTATGATACAGTGCCTTCGGCTGTAGCTTCAGCTACCCCTATCTACGATATGAGTTCTACAGGAAACAATACGCTAATAGATACTAGTAAGGTGTCTCCGGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACTAGTAAGATGGATGACCAGACATCCCCAGGGAAGACTGTGAATAAGCGAAATAATTTTTCGTCTGATTGTTCTGTTCTTGGTGAAAACCAATCAAATCCTCATACTGTCATTGGATTTTCTGAGCACTGGTTGAACAGAAGTAGCAGAAACGAGGATAATGATGATGCTTCTCGAGATGGAAGAGCAGCTTATGATAATTTTAGTGAAACACAAACGGAATCTCAGGTTGTTGGTTACGAAGAAGATTTGTCTGGAAGACAAATGCTTATTGACAGAGTCCGAACCCGTGGTAGTATGGCTTGA 2958 0.427 MLRTNAFEGADVFMSRNLVPPEVFDALHDALKNNGARVHLCCDPSRNGPHDYHIISHDHEKLEDLKARGCNLLGPQCVLSCAKEQRPLPKQGFTCCLAMDGVKVLASGFDMDEKMKIGELVNSMGGILHTKASLDVNFVIVKNVLAAKYKWALNMLKKPIVTPNWLKQCSIEHRIVPQESYRILPFSGLTICVTRIPADERRKIEMLIVQNGGKYSAELTKKCTHLISDAPEGDKYKVAKRWGHIHIVTKKWFDQSIARRACLNEESYPVQHGPVSSQRMSGDNLTAQHSQERESGKWQSAAASGPADSCMPAVSYAEPVDGDPDATQSENTSAAILDVPIFVNGTDPEARPVQPKKEPNLDSAVARDSESDDNDLYLSECRISLVGFEASEMRKLVNLIHKGGGSRYMSLNDKLTHIVVGTPSEIEKKDVRSLAALGIIYVVKTAWLEDCDREKKEVPVLKRHIAQDLLLPKGSTSFVKGVVTGIMTMNKGKGFSTHQSLQADQAITSMDSRVVMPLSVEKREEKKLEIDVINQSSLKSMDKPTKQMQLPVVNNKMKGQKKMHNDSSQCVKSSTVFWGRTFCFSNSFPEERRDEIIQWISQGKGEVVNGHRKQNAHYTIECHGVTRRLEEISPTTYISSHWIRSCLENDCLLDVDSHILYSPLPCCIPLPGFESFRFCVSQYEGKDRMLLRNLCFVLGATFVEKLTKKVTHLLCKFINGPKYEAACKWGIQAVTSEWIFECVKQNKVVGVDQFLPKEVSVQDHENQEAGVFTVSQFPNPAESIGGDSSAQFSSRSQNLRNIPNQNMASQVDNYEVNAKISSVYCKRARLLEESGLYDTVPSAVASATPIYDMSSTGNNTLIDTSKVSPAVPDVAAAIEDLLEQTSKMDDQTSPGKTVNKRNNFSSDCSVLGENQSNPHTVIGFSEHWLNRSSRNEDNDDASRDGRAAYDNFSETQTESQVVGYEEDLSGRQMLIDRVRTRGSMA 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5828g00003 985 ProSiteProfiles BRCT domain profile. 186 270 IPR001357 -
Pral5828g00003 985 MobiDBLite consensus disorder prediction 269 329 - -
Pral5828g00003 985 SUPERFAMILY BRCT domain 58 183 IPR036420 -
Pral5828g00003 985 ProSiteProfiles BRCT domain profile. 373 465 IPR001357 -
Pral5828g00003 985 ProSiteProfiles BRCT domain profile. 673 756 IPR001357 -
Pral5828g00003 985 FunFam Transcription coactivator 569 666 - -
Pral5828g00003 985 SUPERFAMILY BRCT domain 371 459 IPR036420 -
Pral5828g00003 985 ProSiteProfiles BRCT domain profile. 99 183 IPR001357 -
Pral5828g00003 985 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 8 983 - -
Pral5828g00003 985 CDD BRCT 102 169 - -
Pral5828g00003 985 Gene3D BRCT domain 185 271 IPR036420 -
Pral5828g00003 985 MobiDBLite consensus disorder prediction 949 963 - -
Pral5828g00003 985 Pfam BRCA1 C Terminus (BRCT) domain 100 169 IPR001357 -
Pral5828g00003 985 Pfam BRCA1 C Terminus (BRCT) domain 375 451 IPR001357 -
Pral5828g00003 985 ProSiteProfiles BRCT domain profile. 572 660 IPR001357 -
Pral5828g00003 985 SMART BRCT_7 670 746 IPR001357 -
Pral5828g00003 985 SMART BRCT_7 96 173 IPR001357 -
Pral5828g00003 985 SMART BRCT_7 375 455 IPR001357 -
Pral5828g00003 985 SMART BRCT_7 574 650 IPR001357 -
Pral5828g00003 985 SMART BRCT_7 183 260 IPR001357 -
Pral5828g00003 985 SUPERFAMILY BRCT domain 669 757 IPR036420 -
Pral5828g00003 985 FunFam DNA topoisomerase II binding protein 1 186 278 - -
Pral5828g00003 985 MobiDBLite consensus disorder prediction 931 947 - -
Pral5828g00003 985 MobiDBLite consensus disorder prediction 270 298 - -
Pral5828g00003 985 FunFam Transcription coactivator 96 184 - -
Pral5828g00003 985 Gene3D BRCT domain 45 93 IPR036420 -
Pral5828g00003 985 FunFam Transcription coactivator 355 465 - -
Pral5828g00003 985 Gene3D BRCT domain 358 463 IPR036420 -
Pral5828g00003 985 MobiDBLite consensus disorder prediction 931 965 - -
Pral5828g00003 985 Pfam twin BRCT domain 189 252 IPR001357 -
Pral5828g00003 985 Pfam twin BRCT domain 677 738 IPR001357 -
Pral5828g00003 985 Gene3D BRCT domain 96 184 IPR036420 -
Pral5828g00003 985 MobiDBLite consensus disorder prediction 345 369 - -
Pral5828g00003 985 Pfam BRCT domain, a BRCA1 C-terminus domain 574 657 IPR001357 -
Pral5828g00003 985 MobiDBLite consensus disorder prediction 351 369 - -
Pral5828g00003 985 CDD BRCT_TopBP1_rpt2_like 185 260 - -
Pral5828g00003 985 Gene3D BRCT domain 569 666 IPR036420 -
Pral5828g00003 985 Gene3D BRCT domain 668 760 IPR036420 -
Pral5828g00003 985 SUPERFAMILY BRCT domain 574 662 IPR036420 -
Pral5828g00003 985 CDD BRCT_TopBP1_rpt2_like 671 746 - -
Pral5828g00003 985 SUPERFAMILY BRCT domain 185 271 IPR036420 -
Pral5828g00003 985 CDD BRCT_TopBP1_rpt3 372 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5828g00003 Pral-Chr5828 13241 21272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5828g00003 1 985 Core DNA Replication Machinery Family AT1G77320 50.583 0.0 931
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5828g00003 K10728 - qsa:O6P43_015132 1279.62