Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5828g00002 ATGCTGCGGACGAATGCATTCGAAGGCGCGGATGTGTTCATGTCGCGGAACCTCGTGCCGCCGGAAGTCTTCGACGCACTTCACGACGCGCTTAAGAATAACGGCGCGCGTGTCCACCTTTGCTGCGATCCTTCGCGCAATGGGCCGCACGACTATCATATCATATCTCACGATCATGAGAAACTGGAGGATCTTAAAGCCAGGGGTTGTAATCTGCTTGGTCCTCAGTGTGTGCTTTCATGTGCAAAAGAACAAAGACCCCTGCCTAAACAGGGTTTTACTTGTTGCCTTGCCATGGATGGTGTCAAAGTACTTGCATCTGGCTTTGATATGGATGAGAAGATGAAGATAGGAGAGTTAGTAAATTCTATGGGAGGAATTCTGCATACTAAAGCATCACTGGATGTAAACTTTGTGATTGTGAAAAATGTTTTAGCTGCAAAGTACAAGTGGGCTTTGAATATGCTGAAGAAACCAATTGTCACTCCTAATTGGTTAAAGCAATGCTCTATTGAGCATCGCATTGTTCCTCAAGAGTCATACAGGATTCTTCCCTTTTCTGGGTTGACAATTTGTGTTACCCGAATTCCAGCAGATGAGCGCAGGAAAATTGAGATGCTTATTGTACAGAATGGTGGGAAATACTCTGCAGAGCTGACAAAGAAGTGCACACATTTGATTTCTGATGCTCCTGAAGGTGACAAATATAAGGTGGCAAAACGATGGGGTCACATCCATATTGTGACAAAGAAATGGTTTGATCAGTCTATTGCCAGGAGGGCATGTCTGAATGAGGAGTCCTACCCTGTTCAGCATGGACCTGTATCTTCACAAAGAATGTCCGGGGATAATTTAACAGCACAACATAGTCAAGAGAGGGAAAGTGGGAAATGGCAATCAGCAGCAGCATCTGGACCTGCAGATTCATGTATGCCTGCTGTTTCCTATGCTGAGCCTGTGGACGGAGATCCAGATGCTACACAGTCAGAAAACACTTCTGCCGCCATTTTAGATGTTCCTATCTTTGTTAATGGGACAGATCCTGAAGCACGTCCAGTGCAACCCAAAAAGGAACCAAACCTTGACAGTGCTGTAGCCAGAGATTCTGAATCTGATGATAATGACCTGTACTTATCAGAGTGCAGAATATCACTTGTTGGCTTTGAAGCCTCTGAAATGCGTAAGCTAGTTAATTTGATTCATAAGGGAGGAGGGTCCAGATATATGTCGCTTAATGACAAGTTGACACACATAGTTGTTGGAACCCCGTCAGAAATAGAAAAGAAGGATGTAAGGAGCCTTGCTGCTCTGGGTATCATCTATGTTGTTAAAACTGCATGGCTTGAAGATTGTGACCGTGAAAAGAAAGAAGTTCCTGTTCTGAAGAGACATATTGCGCAAGATCTTCTTCTTCCAAAAGGTTCCACATCTTTTGTGAAAGGAGTTGTAACTGGCATTATGACCATGAATAAAGGTAAAGGCTTCAGCACTCATCAGAGCCTGCAGGCTGATCAGGCGATAACTAGTATGGACTCTCGAGTTGTAATGCCATTGTCCGTGGAGAAAAGAGAAGAAAAGAAGCTGGAGATCGATGTGATCAATCAGTCCAGTCTTAAATCAATGGACAAGCCGACAAAGCAAATGCAACTTCCTGTCGTTAATAATAAAATGAAGGGTCAAAAGAAGATGCATAATGACTCTTCTCAGTGTGTGAAGTCATCAACAGTTTTCTGGGGGAGGACGTTTTGTTTTTCAAATTCTTTTCCTGAAGAGAGAAGAGATGAGATTATTCAATGGATAAGTCAAGGAAAAGGAGAGGTAGTAAATGGGCACAGAAAACAGAATGCCCACTATACTATTGAGTGCCACGGTGTAACAAGGAGGTTGGAAGAAATTTCCCCGACTACGTATATCTCCAGTCATTGGATACGATCTTGTTTAGAGGGGAAAGACAGAATGCTGCTAAGGAACTTGTGCTTTGTTCTCGGAGCTACATTTGTGGAGAAGTTGACAAAGAAAGTCACACATTTATTGTGTAAATTCATCAATGGGCCTAAGTATGAGGCTGCTTGTAAGTGGGGGATCCAGGCAGTTACCTCTGAATGGATATTTGAATGTGTCAAACAGAATAAAGTTGTTGGTGTTGATCAATTTTTACCCAAAGAAGTTTCTGTTCAAGATCATGAGAACCAGGAGGCAGGAGTTTTTACTGTGAGTCAATTTCCTAACCCGGCTGAAAGCATAGGTGGAGACAGCTCTGCCCAGTTTTCAAGTCGATCACAAAATTTGAGAAACATACCAAATCAAAATATGGCTAGTCAAGTCGACAATTATGAGGTTAATGCTAAAATATCAAGTGTTTACTGCAAAAGGGCAAGGCTTTTGGAAGAGTCTGGCCTGTATGATACAGTGCCTTCGGCTGTAGCTTCAGCTACCCCTATCTACGATATGAGTTCTACAGGAAACAATACGCTAATAGATACTAGTAAGGTGTCTCCGGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACTAGTAAGATGGATGACCAGACATCCCCAGGGAAGACTGTGAATAAGCGAAATAATTTTTCGTCTGATTGTTCTGTTCTTGGTGAAAACCAATCAAATCCTCATACTGTCATTGGATTTTCTGAGCACTGGTTGAACAGAAGTAGCAGAAACGAGGATAATGATGATGCTTCTCGAGATGGAAGAGCAGCTTATGATAATTTTAGTGAAACACAAACGGAATCTCAGGTTGTTGGTTACGAAGAAGATTTGTCTGGAAGACAAATGCTTATTGACAGAGTCCGAACCCGTGGTAGTATGGCTTGA 2850 0.4277 MLRTNAFEGADVFMSRNLVPPEVFDALHDALKNNGARVHLCCDPSRNGPHDYHIISHDHEKLEDLKARGCNLLGPQCVLSCAKEQRPLPKQGFTCCLAMDGVKVLASGFDMDEKMKIGELVNSMGGILHTKASLDVNFVIVKNVLAAKYKWALNMLKKPIVTPNWLKQCSIEHRIVPQESYRILPFSGLTICVTRIPADERRKIEMLIVQNGGKYSAELTKKCTHLISDAPEGDKYKVAKRWGHIHIVTKKWFDQSIARRACLNEESYPVQHGPVSSQRMSGDNLTAQHSQERESGKWQSAAASGPADSCMPAVSYAEPVDGDPDATQSENTSAAILDVPIFVNGTDPEARPVQPKKEPNLDSAVARDSESDDNDLYLSECRISLVGFEASEMRKLVNLIHKGGGSRYMSLNDKLTHIVVGTPSEIEKKDVRSLAALGIIYVVKTAWLEDCDREKKEVPVLKRHIAQDLLLPKGSTSFVKGVVTGIMTMNKGKGFSTHQSLQADQAITSMDSRVVMPLSVEKREEKKLEIDVINQSSLKSMDKPTKQMQLPVVNNKMKGQKKMHNDSSQCVKSSTVFWGRTFCFSNSFPEERRDEIIQWISQGKGEVVNGHRKQNAHYTIECHGVTRRLEEISPTTYISSHWIRSCLEGKDRMLLRNLCFVLGATFVEKLTKKVTHLLCKFINGPKYEAACKWGIQAVTSEWIFECVKQNKVVGVDQFLPKEVSVQDHENQEAGVFTVSQFPNPAESIGGDSSAQFSSRSQNLRNIPNQNMASQVDNYEVNAKISSVYCKRARLLEESGLYDTVPSAVASATPIYDMSSTGNNTLIDTSKVSPAVPDVAAAIEDLLEQTSKMDDQTSPGKTVNKRNNFSSDCSVLGENQSNPHTVIGFSEHWLNRSSRNEDNDDASRDGRAAYDNFSETQTESQVVGYEEDLSGRQMLIDRVRTRGSMA 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5828g00002 949 ProSiteProfiles BRCT domain profile. 186 270 IPR001357 -
Pral5828g00002 949 SMART BRCT_7 96 173 IPR001357 -
Pral5828g00002 949 SMART BRCT_7 375 455 IPR001357 -
Pral5828g00002 949 SMART BRCT_7 635 710 IPR001357 -
Pral5828g00002 949 SMART BRCT_7 183 260 IPR001357 -
Pral5828g00002 949 Gene3D BRCT domain 358 463 IPR036420 -
Pral5828g00002 949 FunFam Transcription coactivator 355 465 - -
Pral5828g00002 949 MobiDBLite consensus disorder prediction 269 329 - -
Pral5828g00002 949 ProSiteProfiles BRCT domain profile. 373 465 IPR001357 -
Pral5828g00002 949 MobiDBLite consensus disorder prediction 895 929 - -
Pral5828g00002 949 ProSiteProfiles BRCT domain profile. 99 183 IPR001357 -
Pral5828g00002 949 CDD BRCT 102 169 - -
Pral5828g00002 949 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 8 648 - -
Pral5828g00002 949 SUPERFAMILY BRCT domain 58 183 IPR036420 -
Pral5828g00002 949 FunFam Transcription coactivator 96 184 - -
Pral5828g00002 949 Gene3D BRCT domain 569 649 IPR036420 -
Pral5828g00002 949 FunFam Transcription coactivator 569 662 - -
Pral5828g00002 949 CDD BRCT 645 706 - -
Pral5828g00002 949 Gene3D BRCT domain 96 184 IPR036420 -
Pral5828g00002 949 Gene3D BRCT domain 185 271 IPR036420 -
Pral5828g00002 949 MobiDBLite consensus disorder prediction 270 298 - -
Pral5828g00002 949 FunFam DNA topoisomerase II binding protein 1 186 278 - -
Pral5828g00002 949 SUPERFAMILY BRCT domain 185 271 IPR036420 -
Pral5828g00002 949 SUPERFAMILY BRCT domain 371 459 IPR036420 -
Pral5828g00002 949 MobiDBLite consensus disorder prediction 913 927 - -
Pral5828g00002 949 Gene3D BRCT domain 650 737 IPR036420 -
Pral5828g00002 949 MobiDBLite consensus disorder prediction 345 369 - -
Pral5828g00002 949 MobiDBLite consensus disorder prediction 351 369 - -
Pral5828g00002 949 Gene3D BRCT domain 44 93 IPR036420 -
Pral5828g00002 949 ProSiteProfiles BRCT domain profile. 635 720 IPR001357 -
Pral5828g00002 949 SUPERFAMILY BRCT domain 642 721 IPR036420 -
Pral5828g00002 949 CDD BRCT_TopBP1_rpt2_like 185 260 - -
Pral5828g00002 949 SUPERFAMILY BRCT domain 574 650 IPR036420 -
Pral5828g00002 949 Pfam twin BRCT domain 189 252 IPR001357 -
Pral5828g00002 949 Pfam twin BRCT domain 648 702 IPR001357 -
Pral5828g00002 949 CDD BRCT_TopBP1_rpt3 372 456 - -
Pral5828g00002 949 MobiDBLite consensus disorder prediction 895 911 - -
Pral5828g00002 949 Pfam BRCA1 C Terminus (BRCT) domain 100 169 IPR001357 -
Pral5828g00002 949 Pfam BRCA1 C Terminus (BRCT) domain 375 451 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5828g00002 Pral-Chr5828 13241 21272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5828g00002 1 949 Core DNA Replication Machinery Family AT1G77320 48.350 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5828g00002 K10728 - qsa:O6P43_015132 1198.73