Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5822g00005 ATGCAGAAACTATGGCTTCTTGTACTTGTAATTTTCTACTGCGGCATTTATTCAAACGGATTAAGTGGTGTTCCTGCAAGACCTAGTTCCGTCAATGTTGGGGCAATTCTATCTTTCAATTCAACAATTGGCAAAGTCGCAAAAGTTGCAATAGATGCAGCAAAGGATGATATAAACTCCAATCCATCAGTTCTTAATGGAACTAAACTCAATATTTCATTCCAGGACACCAAATTCTCCACTGGTTTTCTCGGCATCATTGATTCATTATTATTGATGGAGAATGATACAGTGGCCATAATTGGCCCCCAATACTCAGTGATGGCTCATGTGATTTCACACATATCCAATGAACTGCAAGTACCGTTACTATCATTTGCAGCAACAGACCCTACCTTGACTTCTCTTCAGTTCCCATATTTTGTTAGGACAACACATAGTGATCAATTTCAGATGGCTGCCATGGCAGATATTGTTGACTACTATCAATGGAGAGATGTGATAGCAATCTACATCGATGATGATCATGGAAGAAATGGGATAGCTGCATTAGAAGATAAGCTCGCTGAGAAACGTTGTAAGATCTCATATAAAGCCCCTCTTACGCCTAATAACATAAGCAGGGAAGAAATAAACAATGCATTAGTTAAGGTCATTATAAGGGAGTCCAGGGTTATAGTCCTACACATATACCCTAGTTTTGGTGTAGATGTACTTCATGTGGCTGAGTCACTAGGCATGTTGGGAAGTGGGTATGTGTGGTTGGCCACCGATTGGCTTTCCACAGTCCTAGATACTGATCCAACTAGGTCGTCTTCATACATGAATGACCTCCAAGGTGTTATAACCTTGAGAATGTACACACCTGATTCTGGAACGAAAAAGAATTTATCTTCCAGGTGGAGTAATTTAGTACAGAAGAAAGCTCCTGATCAAAGTCCTTTCATGTGGAACACTTATGGCCTTTATGCCTATGACACTGTTTGGGTCCTTGCACATGCCCTTGATTCATTTTTCAATAGGGGAGGGACTTTATCATTTTCAAATGATTCAAGTCTAAACAAACTAACAGGGGGTAGACTGGACTTAAATTCTATAAAGGTCTTTGCTAACGGGAGGTTATTGTTGGAAGAAACTATGAAGGTCAATAGAACTGGTTTAACAGGTCAAATGATGTTTAGTCCAGATGGTGAGCTTATGAATCCTTCATACGAAATCATTAATGTGATTGGTACTGGGGTTAGGAGGATTGGATTTTGGTCCAATTCCTCTGGTTTACACACTGGACAAGCACCTAGTCATTCAAACTCAAGTAAAGGGCTTTATGGCGTGATATGGCCTGGGCAAACAACAGCAACACCTCGTGGTTGGGTTTTTCCCAACAATGGTAGGCGTTTAATTATTGGGGTGCCTCTCAAGATTAGTTCCCATGAATTAGTTTCAAGAATTGAAGGATCTGAAAGGTTTGGAGGTTATTGTATAGATGTGTTCACAGCCGCACTAGACTTATTGCCTTATCCAGTTCCATACAAGTTTGTCCCATTTGGAGATGGGAAAACTAACCCATTAACCTCAAAACTTCTGCAAAAAATCACAACTGGTGAGTTTGATGCTGTGGTAGGTGACATTACAATTACCACGAACAGAACAAAGATAGTGGATTTCACGCAACCATATATTGAGTCTGGGCTTGTTGTTGTTGCTCCTATTAGAAAGTCAAACTCTAGTGCTTGGGCTTTCCTAAGACCATTTACTCCAATGATGTGGTTTGTGACTGGAATGTCATTCTTTGTTGTGGGAGCAGTTGTATGGGTTTTAGAACGGCGAGTAAATGATGATTTTAGAGGTCCTGCTAGAAGACAATTTGTGACCATTATATGGTTTAGTTTCTCAACCCTATTTTTTGCACATAGAGAGAGAACTTTGAGCACCCTGGGTCGCTTAGTGCTAATAATATGGCTATTCGTGGTCCTGATACTGAACTCAAGCTACACAGCAAGCCTGACCTCTATTCTCACAGTGGAACAGCTATCTTCCCCAGTGAAAGGAATTGAGAGCTTAGTAACCAGCAAAGACCTCATTGGCTATCCGCGAGGCTCATTTGTAGAGAACTACCTCATTGAAGAACTCAACATCATGAAATCCAGACTTGTGCCGCTGGATTCTCCATCAGAATATGAGAAAGCCTTGAAGGATGGACCTGCCAATGGTGGTGTTACAGCAATCATCGATGAACGTGCTTACATGGAGCTCTTTCTTTCAACTAGATGTGAATTTGGAATCGTTGGTCAACAGTTCACCAAAATGGGCTGGGGTTTTGCTTTTCCCAAAGATTCTCCTTTGGCAATAGACATGTCAACAGCAATCTTGAAACTATCAGAGAATGGTGATCTTCAAAGGATACATGACAAATGGCTTTCAAGAAGTGCATGCAGTTCAGAAGGCTCAAAGCAAGGCATAGACAGATTACAGCTAAGGAGCTTCTGGGGTCTCTTTCTTCTCTGTGGCATTGCCTGTTTCATAGCTCTAGTTTGTTATCTCATTCGCATGGCCTACCGTTTCAGCCGCCACTCCGATTGTGACCTTGCAGGCTCATCGCACTTAGCTCGAATCCGGTCATTTATTTCCTTTGTCAATGAAAAAGAAGAGGAAGGAAAGAATTGCAGCAAGCCAAGGAGCAGTAGAAAAGTGGTGCATGAAGATGGGTCAACGGATGGCTACACTATTGACAGTGTTCGTTGTGAAAATGGTCAATAG 2757 0.4146 MQKLWLLVLVIFYCGIYSNGLSGVPARPSSVNVGAILSFNSTIGKVAKVAIDAAKDDINSNPSVLNGTKLNISFQDTKFSTGFLGIIDSLLLMENDTVAIIGPQYSVMAHVISHISNELQVPLLSFAATDPTLTSLQFPYFVRTTHSDQFQMAAMADIVDYYQWRDVIAIYIDDDHGRNGIAALEDKLAEKRCKISYKAPLTPNNISREEINNALVKVIIRESRVIVLHIYPSFGVDVLHVAESLGMLGSGYVWLATDWLSTVLDTDPTRSSSYMNDLQGVITLRMYTPDSGTKKNLSSRWSNLVQKKAPDQSPFMWNTYGLYAYDTVWVLAHALDSFFNRGGTLSFSNDSSLNKLTGGRLDLNSIKVFANGRLLLEETMKVNRTGLTGQMMFSPDGELMNPSYEIINVIGTGVRRIGFWSNSSGLHTGQAPSHSNSSKGLYGVIWPGQTTATPRGWVFPNNGRRLIIGVPLKISSHELVSRIEGSERFGGYCIDVFTAALDLLPYPVPYKFVPFGDGKTNPLTSKLLQKITTGEFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKSNSSAWAFLRPFTPMMWFVTGMSFFVVGAVVWVLERRVNDDFRGPARRQFVTIIWFSFSTLFFAHRERTLSTLGRLVLIIWLFVVLILNSSYTASLTSILTVEQLSSPVKGIESLVTSKDLIGYPRGSFVENYLIEELNIMKSRLVPLDSPSEYEKALKDGPANGGVTAIIDERAYMELFLSTRCEFGIVGQQFTKMGWGFAFPKDSPLAIDMSTAILKLSENGDLQRIHDKWLSRSACSSEGSKQGIDRLQLRSFWGLFLLCGIACFIALVCYLIRMAYRFSRHSDCDLAGSSHLARIRSFISFVNEKEEEGKNCSKPRSSRKVVHEDGSTDGYTIDSVRCENGQ 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5822g00005 918 Gene3D - 577 703 - -
Pral5822g00005 918 Gene3D - 769 805 - -
Pral5822g00005 918 MobiDBLite consensus disorder prediction 883 910 - -
Pral5822g00005 918 Gene3D - 740 768 - -
Pral5822g00005 918 FunFam Glutamate receptor 577 707 - -
Pral5822g00005 918 SUPERFAMILY Periplasmic binding protein-like II 442 808 - -
Pral5822g00005 918 SMART GluR_14 467 808 IPR001320 GO:0015276|GO:0016020
Pral5822g00005 918 MobiDBLite consensus disorder prediction 883 903 - -
Pral5822g00005 918 Gene3D - 147 426 - -
Pral5822g00005 918 FunFam Glutamate receptor 147 307 - -
Pral5822g00005 918 Gene3D - 49 401 - -
Pral5822g00005 918 Pfam Receptor family ligand binding region 49 411 IPR001828 -
Pral5822g00005 918 SUPERFAMILY Periplasmic binding protein-like I 26 458 IPR028082 -
Pral5822g00005 918 FunFam Glutamate receptor 461 577 - -
Pral5822g00005 918 CDD GluR_Plant 464 806 - -
Pral5822g00005 918 PIRSF IGluLR_plant 1 911 IPR017103 -
Pral5822g00005 918 Pfam Bacterial extracellular solute-binding proteins, family 3 491 807 IPR001638 -
Pral5822g00005 918 Pfam Ligand-gated ion channel 808 839 IPR001320 GO:0015276|GO:0016020
Pral5822g00005 918 Gene3D - 468 576 - -
Pral5822g00005 918 CDD PBP1_GABAb_receptor_plant 32 426 IPR044440 -
Pral5822g00005 918 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 881 IPR015683 -
Pral5822g00005 918 FunFam Glutamate receptor 703 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5822g00005 Pral-Chr5822 27682 31688 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5822g00005 5 914 Ion Channels AT3G51480 56.692 0.0 1070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5822g00005 K05387 - gmx:100790502 1428.69