Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5822g00003 ATGCAAAAAATATGGCTTCTTGTGCTCGTGATTTTCTACTGCGGCATTTATTCAAACGGGTTAAGTGGTGTTCCTGCAAGACCTGGTTCCGTCAACATTGGGGCAATTCTATCTTTCAATTCAACCGCTGGCAAAGTCGCAAGAGTTGCAATTGATGCGGCAAAGGATGATATAAACTCCAATCCATCAGTTCTTAATGGAACTAAACTCAATATTTCATTCCAGGACACCAAATTCTCCACTGGTTTTCTTGGCATCGTTGACTCATTATTATTGATGGAGAATGATACAGTGGCCATAATTGGCCCTCAATACTCAGTGATGGCTCACGTGATTTCACACATAGCCAATGAACTGCAAGTACCATTACTATCATTTGCGGCAACAGACCCTACCTTGACTTCTCTTCAGTTCCCATATTTTGTTAGGACAACACATAGTGATCAATTTCAAATGGCTGCTGTGGCAGATATTGTTGACTATTATCAATGGAGAGATGTGATAGCAATCTACATCGATGATGATCATGGAAGAAATGGGATAGTTGCATTAGAAGATAAGCTAGCTGAGAAACGTTGTAAGATCTCATATAAAGCCCCTCTTACACCAAATAATATCGACAAGGAAGAAATAAACAATGCACTAGTCAAGGTCATTATAAGGGAGTCCAGGGTTATAGTCCTACACATATACCCTAGTTTTGGTGTAGATGTACTTCATGTGGCTGAGTCACTAGGCATGTTGGGAAGTGGGTATGTCTGGTTGGCCACTGATTGGCTTTCCACAGTCCTAGATACTGATCCAACTAGGTCGTCTTCATACATGAATGACCTCCAAGGTGTTATAACCTTGAGAATGTACACACCTGATTCTGGAACGAAACAGAATTTATCTTCCAGGTGGAGTAATTTAGTACAGAAGAAAGCTCCTGATCAAAGTCCTTTCATGTGGAACACTTATGGCCTTTATGCCTATGACACTGTTTGGGTCCTTGCACATGCCCTTGATTCATTTTTCAATAGGGGAGGGACTTTATCATTTTCAAATGATTCAAGTCTAAACAAACTAACAGGGGGTAGACTGGACTTAAATTCTATAAGGGTCTTTGCCAACGGGAGGTTATTGCTGGAAGAAACTATGAAGGTGAATAGAACTGGTTTAACAGGTCAAATGATGTTTAGTCCAGATGGCGAGCTTATGAATCCTTCATACGAAATCATTAATGTGATTGGTACTGGGGTTAGGAGGATTGGATTTTGGTCCAATTCCTCTGGTTTACACACTGGACAAGCACCTAGTCATTCAAACTCAAGTAAAGGGCTTTATGGCGTGATATGGCCTGGGCAAACAACAACAACACCTCGTGGTTGGGTTTTTCCCAACAATGGTAGGCGTTTAATTATTGGGGTGCCTCTCAGGATTAGTTACCATGAATTTGTGTCAAGAATTGAAGGATTTGAAATATTTGGAGGTTATTGCATAGATGTCTTCAAAGCTGCACTGGACTTATTGCCTTATCCAGTTCCATACAATTTTGTCCCATTTGGAGATGGTAAAAGTAACCCATTAAACTCAGAACTTCTGAAAAAAATCACAACTGGTGAGTTTGATGCTGTGGTAGGTGACATTACTATTACCACAAACAGAACAAAGATAGTGGATTTCACACAACCATATATTGAGTCTGGGCTAGTTGTTGTGGCTCCTATTAGAAAGTCAAACTCTAACGCTTGGGCTTTCCTAAGACCATTTACTCCAATGATGTGGTTTGTGACTGGAATGTCTTTCTTTGTTGTGGGAGCAGTTGTGTGGGTTTTAGAACGGCGAGTAAATGACGATTTTCGAGGTCCCGCTAGAAGACAGTTTGTGACCATTATATGGTTTAGTTTTTCAACCCTGTTTTTTGCACATAGAGAGAGAACTTTGAGCACCCTGGGTCGCTTAGTGCTGATAATATGGCTATTTGTAGTCCTAATACTGAACTCCAGCTACATAGCAAGCCTGACCTCTATTCTCACAGTGGAACAGCTCTCTTCCCCAGTGAAAGGAATTGAGAGCTTAGTAACCAGCAAAGACCTCATTGGCTATCTACGAGGCTCATTTGCAGAGAACTACCTCACTGAAGAACTCAACATCATGAAATCCAGACTTGTGCCACTGGATTCTCCATTAGAATATGAGAAAGCCTTGAAGGATGGACCTGCCAATGGTGGTGTTGCAGCAATCATTGATGAACGTGCTTACATGGAGCTCTTTCTTTCAACTAGATGTGAATTTGGAATCGTTGGTCAAGAGTTCACCAAAATGGGTTGGGGTTTTGCTTTTCCCAGAGATTCTCCTTTGGCAATAGACATGTCAACAGCAATCTTAAAACTATCAGAGAACGGTGATCTTCAAAGAATACATGACAAATGGCTTTCAAGAAGTGCATGCAGCTCAGAAGGCTCAAAGCAAGGCATAGACAGATTGCAGCTAAGGAGCTTTTGGGGTCTCTTTCTTCTATGTGGGATTGCCTGCTTCATAGCTCTGCTTTGTTATGTCATTCGCATGGCCTACCGTTTTAGCCGCCACTCTGACTGCGACCTCGCCGGCTTGTCGCACTCAGCTCGAATCCAGTCATTTATTTCCTTTGTCAATGAAAAAGAAGAGGAAGGAAAGAATTGCAGCAAGCCAAGGAGAAGCAGAAAAGTAGCGCATGAAGATGGGTCAATGGATGGCTCCAATATTAACGGTGTTCATTATGAAAATGATCCTTCCCAGTGTTAA 2766 0.4165 MQKIWLLVLVIFYCGIYSNGLSGVPARPGSVNIGAILSFNSTAGKVARVAIDAAKDDINSNPSVLNGTKLNISFQDTKFSTGFLGIVDSLLLMENDTVAIIGPQYSVMAHVISHIANELQVPLLSFAATDPTLTSLQFPYFVRTTHSDQFQMAAVADIVDYYQWRDVIAIYIDDDHGRNGIVALEDKLAEKRCKISYKAPLTPNNIDKEEINNALVKVIIRESRVIVLHIYPSFGVDVLHVAESLGMLGSGYVWLATDWLSTVLDTDPTRSSSYMNDLQGVITLRMYTPDSGTKQNLSSRWSNLVQKKAPDQSPFMWNTYGLYAYDTVWVLAHALDSFFNRGGTLSFSNDSSLNKLTGGRLDLNSIRVFANGRLLLEETMKVNRTGLTGQMMFSPDGELMNPSYEIINVIGTGVRRIGFWSNSSGLHTGQAPSHSNSSKGLYGVIWPGQTTTTPRGWVFPNNGRRLIIGVPLRISYHEFVSRIEGFEIFGGYCIDVFKAALDLLPYPVPYNFVPFGDGKSNPLNSELLKKITTGEFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKSNSNAWAFLRPFTPMMWFVTGMSFFVVGAVVWVLERRVNDDFRGPARRQFVTIIWFSFSTLFFAHRERTLSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPVKGIESLVTSKDLIGYLRGSFAENYLTEELNIMKSRLVPLDSPLEYEKALKDGPANGGVAAIIDERAYMELFLSTRCEFGIVGQEFTKMGWGFAFPRDSPLAIDMSTAILKLSENGDLQRIHDKWLSRSACSSEGSKQGIDRLQLRSFWGLFLLCGIACFIALLCYVIRMAYRFSRHSDCDLAGLSHSARIQSFISFVNEKEEEGKNCSKPRRSRKVAHEDGSMDGSNINGVHYENDPSQC 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5822g00003 921 Pfam Ligand-gated ion channel 808 839 IPR001320 GO:0015276|GO:0016020
Pral5822g00003 921 Gene3D - 740 768 - -
Pral5822g00003 921 SMART GluR_14 465 808 IPR001320 GO:0015276|GO:0016020
Pral5822g00003 921 PIRSF IGluLR_plant 1 918 IPR017103 -
Pral5822g00003 921 SUPERFAMILY Periplasmic binding protein-like II 442 808 - -
Pral5822g00003 921 Gene3D - 577 714 - -
Pral5822g00003 921 MobiDBLite consensus disorder prediction 885 921 - -
Pral5822g00003 921 Pfam Bacterial extracellular solute-binding proteins, family 3 524 807 IPR001638 -
Pral5822g00003 921 Gene3D - 49 401 - -
Pral5822g00003 921 Gene3D - 471 576 - -
Pral5822g00003 921 Gene3D - 769 805 - -
Pral5822g00003 921 Gene3D - 147 426 - -
Pral5822g00003 921 SUPERFAMILY Periplasmic binding protein-like I 26 458 IPR028082 -
Pral5822g00003 921 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 881 IPR015683 -
Pral5822g00003 921 FunFam Glutamate receptor 577 707 - -
Pral5822g00003 921 MobiDBLite consensus disorder prediction 885 902 - -
Pral5822g00003 921 CDD GluR_Plant 464 806 - -
Pral5822g00003 921 Pfam Receptor family ligand binding region 49 411 IPR001828 -
Pral5822g00003 921 CDD PBP1_GABAb_receptor_plant 32 426 IPR044440 -
Pral5822g00003 921 FunFam Glutamate receptor 703 810 - -
Pral5822g00003 921 FunFam Glutamate receptor 147 307 - -
Pral5822g00003 921 FunFam Glutamate receptor 461 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5822g00003 Pral-Chr5822 20073 24143 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5822g00003 5 908 Ion Channels AT3G51480 56.627 0.0 1061
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5822g00003 K05387 - gmx:100790502 1447.95