Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5821g00004 ATGGGTGATGAAGAAAGTGGTGGGAATTCTGTAGCAACCTCTTCTGCAACTCCATTAATAAACTGGTGGGATCTTCATGCAAATTCACTTTCTTCCTGGAACACTCATCATCATCAACCTTCTGCAAAACCTCATTCCAATTCCTCCTCCTGTTGTGAAGATCAAGCCATCTCAGTCTCCACATCTTTCGCCGTCGACGAATCCCCTCATCGCCGCCTCGTCGACCTTTCTGCGCCTTCGCCTGACAATAATCACCTCTGGACTCACGTCTTATTAGGTGTTGGAAGCAACGAGGAGCTGCAAAATAGTGAAGCTGGAGGGGAGAACTTGATGGATGCAGTGTCATGTAAAAGCATGATGTACGAACCAGCCTGCAACTACTTGAAGAAACTTGATACCACTTGGGAATACAACCATACTAATAACAGCGATTCTTCATCTGCTTCTTTTGATCATCAGAAACAATTCAATGGTTTCAACGAGGCCGTGCTTGATCAGAGTGAAAGATTGAGCAAGCTGGTTACCACTTGGTCCATTGCACCACCAGACCCACAAGTTCATAATCATAATCATAATCATAATAATTCTACCCACTTTGATCCTCATCAAACACACAACAATAATGATTTGAATTCTTCGATGGATCATTCTGGGGTTTTTTCTTCATACGGTGCTCTTGACATGAAGGTTAAGCAAGAACATCATCATCATGCGATCGGATATCAGAACAACGGATTTAACAGTCAGTATGGGATGCCGGCCAGTTTGTCTTCATCGTGTTCAAGAAATTTGACAGATGTTATATCTTTTACGGGAAGGATAGGCCGGCCGATTATCGGAATTCATGCACTGAAACCCAGTTTCAGACCACCTTCGATGAATACTGTATCTGACTCCAAGAAACACACTTTTCAGACATCACTGCCGACAAGGACAAACAATGGAAGAGGACAAGGGAGCTCCACTGAGGTAAAGAAGAAAAGAACAGATGACTCATCATCAGAAGCAATCTCGAAGAAGCCAAAGCAAGAGACATCTACTGCATCTTCTGCAAAGATGCAAGCACCAAAAGTCAAGCTAGGCGACAGGATTACAACCCTTCAGCAAATTGTGTCGCCATTTGGAAAGACGGACACTGCATCAGTGCTTTTTGAAGCAATTGGGTACATAAAGTTTTTACAAGAACAAGTGCAGCTACTGAGCAACTCTTACACGAAGACTAACTCGCATCACAAGGAAACATGGGGAAGCATGGAGAGGAAATTAGAAGAGAAGGGAGACCTGAAGAGCAGAGGGCTTTGTCTGGTTCCAATTTCATGGACTCCTCAGGCTTACAGAGACAGCACTGCCCCTGACTACTGGACTCCTGCTTATCGAGGCTGCTTGTTTAGGTAG 1395 0.4416 MGDEESGGNSVATSSATPLINWWDLHANSLSSWNTHHHQPSAKPHSNSSSCCEDQAISVSTSFAVDESPHRRLVDLSAPSPDNNHLWTHVLLGVGSNEELQNSEAGGENLMDAVSCKSMMYEPACNYLKKLDTTWEYNHTNNSDSSSASFDHQKQFNGFNEAVLDQSERLSKLVTTWSIAPPDPQVHNHNHNHNNSTHFDPHQTHNNNDLNSSMDHSGVFSSYGALDMKVKQEHHHHAIGYQNNGFNSQYGMPASLSSSCSRNLTDVISFTGRIGRPIIGIHALKPSFRPPSMNTVSDSKKHTFQTSLPTRTNNGRGQGSSTEVKKKRTDDSSSEAISKKPKQETSTASSAKMQAPKVKLGDRITTLQQIVSPFGKTDTASVLFEAIGYIKFLQEQVQLLSNSYTKTNSHHKETWGSMERKLEEKGDLKSRGLCLVPISWTPQAYRDSTAPDYWTPAYRGCLFR 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5821g00004 464 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 344 393 IPR011598 GO:0046983
Pral5821g00004 464 MobiDBLite consensus disorder prediction 339 353 - -
Pral5821g00004 464 Gene3D - 354 416 IPR036638 GO:0046983
Pral5821g00004 464 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 359 410 IPR036638 GO:0046983
Pral5821g00004 464 CDD bHLH_AtbHLH_like 359 401 IPR045239 -
Pral5821g00004 464 MobiDBLite consensus disorder prediction 290 320 - -
Pral5821g00004 464 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 164 443 - -
Pral5821g00004 464 MobiDBLite consensus disorder prediction 284 356 - -
Pral5821g00004 464 MobiDBLite consensus disorder prediction 321 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5821g00004 Pral-Chr5821 20391 23134 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5821g00004 16 464 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 33.472 1.69e-42 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5821g00004 - - pcin:129311824 617.076