Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5821g00003 ATGGGTGATGAAGAAAGTGGTGGGAATTCTGTAGCAACCTCTTCTGCAACTCCATTAATAAACTGGTGGGATCTTCATGCAAATTCACTTTCTTCCTGGAACACTCATCATCATCAACCTTCTGCAAAACCTCATTCCAATTCCTCCTCCTGTTGTGAAGATCAAGCCATCTCAGTCTCCACATCTTTCGCCGTCGACGAATCCCCTCATCGCCGCCTCGTCGACCTTTCTGCGCCTTCGCCTGACAATAATCACCTCTGGACTCACGTCTTATTAGGTGTTGGAAGCAACGAGGAGCTGCAAAATAGTGAAGCTGGAGGGGAGAACTTGATGGATGCAGTGTCATGTAAAAGCATGATGTACGAACCAGCCTGCAACTACTTGAAGAAACTTGATACCACTTGGGAATACAACCATACTAATAACAGCGATTCTTCATCTGCTTCTTTTGATCATCAGAAACAATTCAATGGTTTCAACGAGGCCGTGCTTGATCAGAGTGAAAGATTGAGCAAGCTGGTTAAGCAAGAACATCATCATCATGCGATCGGATATCAGAACAACGGATTTAACAGTCAGTATGGGATGCCGGCCAGTTTGTCTTCATCGTGTTCAAGAAATTTGACAGATGTTATATCTTTTACGGGAAGGATAGGCCGGCCGATTATCGGAATTCATGCACTGAAACCCAGTTTCAGACCACCTTCGATGAATACTGTATCTGACTCCAAGAAACACACTTTTCAGACATCACTGCCGACAAGGACAAACAATGGAAGAGGACAAGGGAGCTCCACTGAGGTAAAGAAGAAAAGAACAGATGACTCATCATCAGAAGCAATCTCGAAGAAGCCAAAGCAAGAGACATCTACTGCATCTTCTGCAAAGATGCAAGCACCAAAAGTCAAGCTAGGCGACAGGATTACAACCCTTCAGCAAATTGTGTCGCCATTTGGAAAGACGGACACTGCATCAGTGCTTTTTGAAGCAATTGGGTACATAAAGTTTTTACAAGAACAAGTGCAGGTGCTACTGAGCAACTCTTACACGAAGACTAACTCGCATCACAAGGAAACATGGGGAAGCATGGAGAGGAAATTAGAAGAGAAGGGAGACCTGAAGAGCAGAGGGCTTTGTCTGGTTCCAATTTCATGGACTCCTCAGGCTTACAGAGACAGCACTGCCCCTGACTACTGGACTCCTGCTTATCGAGGCTGCTTGTTTAGGTAG 1230 0.4512 MGDEESGGNSVATSSATPLINWWDLHANSLSSWNTHHHQPSAKPHSNSSSCCEDQAISVSTSFAVDESPHRRLVDLSAPSPDNNHLWTHVLLGVGSNEELQNSEAGGENLMDAVSCKSMMYEPACNYLKKLDTTWEYNHTNNSDSSSASFDHQKQFNGFNEAVLDQSERLSKLVKQEHHHHAIGYQNNGFNSQYGMPASLSSSCSRNLTDVISFTGRIGRPIIGIHALKPSFRPPSMNTVSDSKKHTFQTSLPTRTNNGRGQGSSTEVKKKRTDDSSSEAISKKPKQETSTASSAKMQAPKVKLGDRITTLQQIVSPFGKTDTASVLFEAIGYIKFLQEQVQVLLSNSYTKTNSHHKETWGSMERKLEEKGDLKSRGLCLVPISWTPQAYRDSTAPDYWTPAYRGCLFR 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5821g00003 409 Gene3D - 298 361 IPR036638 GO:0046983
Pral5821g00003 409 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 303 348 IPR036638 GO:0046983
Pral5821g00003 409 MobiDBLite consensus disorder prediction 265 282 - -
Pral5821g00003 409 MobiDBLite consensus disorder prediction 234 264 - -
Pral5821g00003 409 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 92 388 - -
Pral5821g00003 409 MobiDBLite consensus disorder prediction 228 300 - -
Pral5821g00003 409 CDD bHLH_AtbHLH_like 303 344 IPR045239 -
Pral5821g00003 409 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 288 337 IPR011598 GO:0046983
Pral5821g00003 409 MobiDBLite consensus disorder prediction 283 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5821g00003 Pral-Chr5821 20391 23134 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5821g00003 16 409 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 31.788 1.18e-34 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5821g00003 - - pcin:129311824 491.5