Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5821g00002 ATGGTGGCTGGCGCGCAGCAGCAGCAGCAGCATCAACCACAACCTCAATCGCAGCAAGAGACTCAGCAAACTACGACCTCTGCGCAAGATGAGGCCTTAAAGAGGAACACGGATTGCGTCTACTTTCTTGCCTCCCCCTTGACATGCAAAAAGGGAAGTGAATGTGAGTATCGCCATAGCGAGTATGCTCGGGTTAATCCCCGAGATTGTTGGTATTGGTTGAACGGTAATTGCTTGAATCCCAAATGTTCCTTCCGTCATCCGCCTCTTGATAGCTTCTTATCACCACAGGCAGCCACTGCTGGTGGATCATCTGCACCCCCACCACAGACTGCACCAACTTCTGTACCACACGCACCTTATAATTCTACAAAGCAAGCTGTCCCTTGCATTTTCTTCCAGAAAGGGCTTTGCTTAAAAGGTGACCGATGTGCTTTTTTGCATGGACCAAATCCTAACACCAGCAGTAAAGTTCCTCAGGTTCAGGCGACAAACCAGGTTACTGAGCCTCCAAGTTTTAAGAAGGTTTTTAGTGGCCCAGAAAAGTCAACACAAGAAAGGAAAATTTCCCAGGCAAACTTTACAAAGCCAGTTACAGGTGTTGAAGCTAAGCCTGCCCAAAATGTTGGAACTGCTTCGCATAGAAATGTGGTTGCTGTAGAGAGGCATGCACCACCACCAATGGGATTTGATAATGAGGCATCTAGATTTAAGGTAGTAAGTACTCCGCCTGTCACCAATGGAACCACTGTTGCCAGGCCAAACCGTGCATATCAATCTCATGTAACGGATGATCATAGTTTCCACAATGGCAAGGAAAGTGATGAGTTTTTGAGAGAATCCTCACCTGGCTTTGATGTACTTGTTGCTGATGAGCTGAGGAATTCAGATTACTATGATGGAGAAGACCAATTTGGAAAAGCAAGAGGTCAAGATGGGATGAACTTGGACTCTGTGAATGAATATGATTTAGGACATTCTGTAGATTATAAATCTGTAGCTGATATTGACCAAGACAGATATTGTGGACCACAAGGTTATGATTCATACGATCACATGCAAGAGACATATGCGTGGGATCAGCGCAGGAATTCATCAGAAAGAATATTCCGGGCAACAACACATTTAGATAGGATGACTCATCGCAGATCTGGCAGTCCTGAAAATGTGGGGGTTTCAGATCTTCGACATCGTTTATCTAAGCGCAGGAGGGTCAATGGTTTGAAATCTGTTGTGAGTCATGATTTTGCGCATCAGAGCCATGATGATGAGCAAAGTCACCGGTTCTCTTCTCAGAAGGATGTTCACCAGTTACCTCGGAAAGAAAGTGCTCTCAGTAATCGCTTCCGAGGCAGGATAAAGCTTCCAGCAGATGGTGGGGATGAATATGTGGAGAGGGAATCAGACAGGGGAAGAAATAGAAGCACGTTGTCACCTGGAACCATGCAGACTCCTCAAGCAGGTAAGTTCCGAGATAGACTGAGAGGAAGGGTGCAAGAAGATTTTGAGAGGAAAAACTTCATGGATCGCCCTATAAGGAAAGAAATAAGTGGGGACGAACATGCTGATTTTGATGGACCAAAAAGTCTTGCTGAACTGCGAAATGGAAAGAATAATCGGAACAAGGAGCATCAGTTGCTTGGGAAGAGAAAAAGTTTAAAGGAACAACAACAATCCGAAGATGATTTCATGCTTGAAGGTCCAAAACCTCTTAGTGAGATTTTGAAGGAGAAGAGAGCAGCTAGAGTTGAAGCAGCTTCCAAGAGTGGCAAGTCGTCTGAGAATAGAGGAGACAATAAAGACAGAGAAGTTACTAATGGCTCGGAATACACCTCTGTCATGGATGCACGAAATGGCACTTTTCCTGCAAATAAGGAAGATGTTAAGAACGAGGAATCCAAGTTTGAGGCAACCGAGAACACGGTTGAAGAAGGAACGATGGACAACGAAGTGATAGAAGACCAGGAGTTTGAAGGAGATGATCAGAAGGATGGTGATTATTACTATGAGCAAGTTGACGAGGGAGACTACAATTATGATGAAGGCGAAAATCCAGAGCAGGAAGAATACATGGATGATGAGGAGGATGGGGATGACTTTGCTAAGAAGATTGGTGTCATGCTCACATGA 2130 0.4479 MVAGAQQQQQHQPQPQSQQETQQTTTSAQDEALKRNTDCVYFLASPLTCKKGSECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDSFLSPQAATAGGSSAPPPQTAPTSVPHAPYNSTKQAVPCIFFQKGLCLKGDRCAFLHGPNPNTSSKVPQVQATNQVTEPPSFKKVFSGPEKSTQERKISQANFTKPVTGVEAKPAQNVGTASHRNVVAVERHAPPPMGFDNEASRFKVVSTPPVTNGTTVARPNRAYQSHVTDDHSFHNGKESDEFLRESSPGFDVLVADELRNSDYYDGEDQFGKARGQDGMNLDSVNEYDLGHSVDYKSVADIDQDRYCGPQGYDSYDHMQETYAWDQRRNSSERIFRATTHLDRMTHRRSGSPENVGVSDLRHRLSKRRRVNGLKSVVSHDFAHQSHDDEQSHRFSSQKDVHQLPRKESALSNRFRGRIKLPADGGDEYVERESDRGRNRSTLSPGTMQTPQAGKFRDRLRGRVQEDFERKNFMDRPIRKEISGDEHADFDGPKSLAELRNGKNNRNKEHQLLGKRKSLKEQQQSEDDFMLEGPKPLSEILKEKRAARVEAASKSGKSSENRGDNKDREVTNGSEYTSVMDARNGTFPANKEDVKNEESKFEATENTVEEGTMDNEVIEDQEFEGDDQKDGDYYYEQVDEGDYNYDEGENPEQEEYMDDEEDGDDFAKKIGVMLT 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5821g00002 709 MobiDBLite consensus disorder prediction 671 696 - -
Pral5821g00002 709 SUPERFAMILY CCCH zinc finger 125 149 IPR036855 GO:0046872
Pral5821g00002 709 Gene3D - 120 191 - -
Pral5821g00002 709 MobiDBLite consensus disorder prediction 646 661 - -
Pral5821g00002 709 MobiDBLite consensus disorder prediction 96 119 - -
Pral5821g00002 709 MobiDBLite consensus disorder prediction 504 562 - -
Pral5821g00002 709 MobiDBLite consensus disorder prediction 380 404 - -
Pral5821g00002 709 FunFam Zinc finger CCCH domain-containing protein 17 27 90 - -
Pral5821g00002 709 MobiDBLite consensus disorder prediction 1 29 - -
Pral5821g00002 709 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 150 IPR000571 GO:0046872
Pral5821g00002 709 ProSiteProfiles Zinc finger C3H1-type profile. 33 62 IPR000571 GO:0046872
Pral5821g00002 709 Pfam Zinc-finger containing family 34 90 IPR041686 -
Pral5821g00002 709 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Pral5821g00002 709 SMART c3hfinal6 66 89 IPR000571 GO:0046872
Pral5821g00002 709 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Pral5821g00002 709 MobiDBLite consensus disorder prediction 622 641 - -
Pral5821g00002 709 MobiDBLite consensus disorder prediction 571 605 - -
Pral5821g00002 709 ProSiteProfiles Zinc finger C3H1-type profile. 64 90 IPR000571 GO:0046872
Pral5821g00002 709 ProSiteProfiles Zinc finger C3H1-type profile. 124 151 IPR000571 GO:0046872
Pral5821g00002 709 MobiDBLite consensus disorder prediction 416 490 - -
Pral5821g00002 709 Gene3D - 20 91 - -
Pral5821g00002 709 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 30 707 - -
Pral5821g00002 709 MobiDBLite consensus disorder prediction 504 709 - -
Pral5821g00002 709 MobiDBLite consensus disorder prediction 416 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5821g00002 Pral-Chr5821 13381 17245 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral5821g00002 zf-CCCH_3 1.8e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5821g00002 - - gmx:102669253 806.594