Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5820g00001 ATGAGGAAACCTTTCTGTGAGAAGGCGGTTTTGAACAGAGGAGCTTGGTCCAAACAAGAAGATCAGAAACTCATTGATCATATCAACAAACATGGCGAGGGTTCCTGGCGTATCCTCCCTCAAGCTGCTGGTTTACTTCGCTGCGGCAAAAGTTGTAGGCTGAGATGGATAAACTACCTGAGGCCAGACCTTAAAAGAGGCAAGTTTGCTGAAGATGAAGAAGATCTCATCATCAAGCTTCATGCCCTCCTAGGAAACCGGTGGTCACTGATAGCCGGAAGATTACCAGGAAGGACAGATAATGAGGTGAAGAACTATTGGAACTCTCATCTGAGAAAAAAGCTCATAAACAAAGGAATTGATCCGACCAATCATCGGTTAACTCCAAATCCGCCATTAATGTCTGGAAGCTCAGCATCATCATCATATAATAATAGTGCCAAGAATAATGATGAGCCAATTACAAAACCTTATTATGTTTCTGATAACAACTCCAACTGTGATCAAGTCTCAGATGCAGCGAGTGGTTTAGAGGAAGAAGAATCATCTTGCATACCTGATTTGAACCTGGACCCCAATATGAGGACTGATTTGAAGCTGGACCTCAATATGAGGACTGGAATTATTTCTTCTTCTTCTTCACCTTCCCCAGATCCAAAGCGAATTCCAGAATATTCTAGACCTTCAACTGAACTTCTTCTGTTTGGGTGA 711 0.4248 MRKPFCEKAVLNRGAWSKQEDQKLIDHINKHGEGSWRILPQAAGLLRCGKSCRLRWINYLRPDLKRGKFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRKKLINKGIDPTNHRLTPNPPLMSGSSASSSYNNSAKNNDEPITKPYYVSDNNSNCDQVSDAASGLEEEESSCIPDLNLDPNMRTDLKLDLNMRTGIISSSSSPSPDPKRIPEYSRPSTELLLFG 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5820g00001 236 Gene3D - 68 130 - -
Pral5820g00001 236 MobiDBLite consensus disorder prediction 207 236 - -
Pral5820g00001 236 MobiDBLite consensus disorder prediction 120 189 - -
Pral5820g00001 236 CDD SANT 68 111 IPR001005 -
Pral5820g00001 236 FunFam MYB transcription factor 67 128 - -
Pral5820g00001 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Pral5820g00001 236 CDD SANT 15 60 IPR001005 -
Pral5820g00001 236 SMART sant 12 62 IPR001005 -
Pral5820g00001 236 SMART sant 65 113 IPR001005 -
Pral5820g00001 236 FunFam MYB-related transcription factor 12 65 - -
Pral5820g00001 236 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Pral5820g00001 236 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Pral5820g00001 236 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Pral5820g00001 236 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Pral5820g00001 236 MobiDBLite consensus disorder prediction 128 172 - -
Pral5820g00001 236 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 173 - -
Pral5820g00001 236 Gene3D - 13 65 - -
Pral5820g00001 236 SUPERFAMILY Homeodomain-like 12 107 IPR009057 -
Pral5820g00001 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5820g00001 Pral-Chr5820 32058 33816 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5820g00001 2 155 MYB Transcription Factor Family AT4G38620 66.234 2.27e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5820g00001 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5820g00001 K09422 - jre:109008155 276.944