Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5817g00030 ATGCCTATAATTCGTAGCTTAATCCATGACATGAGATCCAGGTCCCGCCGTGGAGTGCAGGACGCTTCCTCAATGGAGGAGCCTGTCACTGATGGCTTGAAGCAGAGTTCCTGGGCCCACATGCCTCAGGAGCTTCTCCGGGAGGTCTTGCTCCGAATTGAGGACTCCGAGAGTTCTTGGCCGCCGCGCAAGAGTGTGGTGGCCTGCGCTGGAGTGTGCCGGAGTTGGAGGGAGATCACTAAGGAGATCGTCAAGCCGCCAGAAGTTTCCGCTAAGATCACGTTCCCGATCGCCGTCAAGCAGCCTGGCCCCAGAGATCATCTTCTTCAGTGTTTTATAAAGCGCAACCGCTCTTCCCAAACATATTATTTGTTTCTCAGTTTAAGTAGTGCTCTAGGTGATGATGGAAAGTTCCTTTTGGCTGCACGTAAGTGTAGGCGTACAACCTGCACCGATTATATTATCTCTCTGGACGTGGATGATATGTCAAATGGAAGCTACACCTATATTGGGAAGCTGCGATCAAATTTTCTGGGGACGAAGTTCACAATATATGATGGCCAGCCACCTCATGCAGGTGCAAAAATTTCAAAAAGTCGCTCCACTAGGCTGGTGAATCTGAAGCAAGTTTCACCCAGGGTCCCCACTGGTAACTATCCAGTGGCCCACATTTCATATGAATTAAATGTGTTGGGCTCCAGGGGGCCTAGGAGAATGAATTGTGTCATGGATTCCATTCCTGCCTCTGCAGTTGAACCAGGAGGGGTAGCGCCAACGCAGACTGACTTTTCTCTAAGCAGCATTGATGTGTTTCCTTCATTTCCATTTTTCCGATCAAAATCAAATCATATGGAAAAATCCGAATCTGGACCCCTGGGTGACAAAAAAGACGGGCTGCTAGTGTTGAAAAACAAATCTCCAAGGTGGCATGAACAGCTCCAATGTTGGTGCTTAAACTTTCATGGACGTGTGACAGTAGCTTCAGTGAAAAACTTTCAGCTTGTCGCTTCCCCAGAAAATGGGGTTGCTGGACCAGAACATGAGAAGATTATTCTCCAGTTTGGCAAAGTTGGGAAGGATTTGTTTACGATGGATTACCGGTACCCCATCTCGGCTTTCCAGGCTTTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATCGCTTGTGAATGA 1173 0.4825 MPIIRSLIHDMRSRSRRGVQDASSMEEPVTDGLKQSSWAHMPQELLREVLLRIEDSESSWPPRKSVVACAGVCRSWREITKEIVKPPEVSAKITFPIAVKQPGPRDHLLQCFIKRNRSSQTYYLFLSLSSALGDDGKFLLAARKCRRTTCTDYIISLDVDDMSNGSYTYIGKLRSNFLGTKFTIYDGQPPHAGAKISKSRSTRLVNLKQVSPRVPTGNYPVAHISYELNVLGSRGPRRMNCVMDSIPASAVEPGGVAPTQTDFSLSSIDVFPSFPFFRSKSNHMEKSESGPLGDKKDGLLVLKNKSPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGVAGPEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5817g00030 390 SUPERFAMILY F-box domain 30 81 IPR036047 GO:0005515
Pral5817g00030 390 CDD F-box_AtTLP-like 38 82 - -
Pral5817g00030 390 Pfam F-box domain 38 84 IPR001810 GO:0005515
Pral5817g00030 390 Gene3D Tubby Protein; Chain A 95 390 IPR025659 -
Pral5817g00030 390 ProSitePatterns Tub family signature 2. 375 390 IPR018066 -
Pral5817g00030 390 Pfam Tub family 99 385 IPR000007 -
Pral5817g00030 390 MobiDBLite consensus disorder prediction 12 34 - -
Pral5817g00030 390 SUPERFAMILY Tubby C-terminal domain-like 87 390 IPR025659 -
Pral5817g00030 390 ProSitePatterns Tub family signature 1. 320 333 IPR018066 -
Pral5817g00030 390 PANTHER TUBBY-RELATED 26 388 - -
Pral5817g00030 390 PRINTS Tubby superfamily signature 218 245 IPR000007 -
Pral5817g00030 390 PRINTS Tubby superfamily signature 169 193 IPR000007 -
Pral5817g00030 390 PRINTS Tubby superfamily signature 368 390 IPR000007 -
Pral5817g00030 390 PRINTS Tubby superfamily signature 347 366 IPR000007 -
Pral5817g00030 390 PRINTS Tubby superfamily signature 153 169 IPR000007 -
Pral5817g00030 390 PRINTS Tubby superfamily signature 302 319 IPR000007 -
Pral5817g00030 390 PRINTS Tubby superfamily signature 320 336 IPR000007 -
Pral5817g00030 390 Gene3D - 31 83 - -
Pral5817g00030 390 FunFam Tubby-like F-box protein 95 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5817g00030 Pral-Chr5817 236836 240194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5817g00030 12 390 TUB Transcription Factor Family AT2G47900 73.560 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pral5817g00030 Tub 5.9e-113 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5817g00030 K19600 - cave:132168101 651.358