Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5817g00026 ATGGCGAGGCGGTCCAAGGGCCAAGCTTCTTCTGATGAAGCCATGTCCAACGGTTCCACTTCCTCGGAAGAGGAGCGTGTCAACGAGCAGATCAACGATGAAGAGGATGAAGAAGAGCTGGAAGCTGTGGCTCGCTCTGCTAGCTCCAATGATAACGATGATGAAGCTGCAGATGGTGATGCGCCGGATTCTGACGAGGATGCGGCTGCCGCTGGAGACGTTGACGAGGAGGAACTGGATGATGGAAATGTTGATCCAGAAATTAGGAAGCGCGAGAAGGCCAGATTAAGAGAAATGCAGAAATTGAAGAAACAAAAAATTCAGGAGATGTTGGATAAGCAAAATGCTACTATTGATGCAGATATGAACAATAAAGGAAAGGGGCGCTTGAAGTATCTCCTACAGCAAACTGAATTGTTTGCTCATTTTGCCAAAGGTGATCCAAGTACCTCTCTGAAGAAGTCAAAAGGAAGGGGTCGCCATGCATCTAAAGTAACTGAAGAAGAAGAAGATGAAGAGTACCTCAAAGAAGAAGAAGACGGTTTAGCTGGGAACACACGGTTGGTGACACAACCATCATGTATTCAAGGGAAGATGAGGGATTACCAACTTGCTGGTCTAAACTGGCTTATAAGATTGTATGAGAATGGTATCAATGGAATTCTGGCAGATGAAATGGGGCTTGGTAAAACTTTGCAAACTATCTCTTTATTGGGTTATTTGCATGAGTTCAGAGGAATTAAAGGTCCTCATATGGTAGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGTCCTGTTCTGCGTGCAATTAAGTTTCTTGGCAATCCTGAGGAAAGGAGACACATCAGAGAGGAATTATTGGTTGCTGGGAAGTTCGATGTATGTGTTACTAGTTTTGAGATGGCAATCAAGGAGAAGTCTGCATTGCGTCGTTTTAGTTGGCGCTACATAATTATTGATGAAGCTCATCGAATCAAGAATGAGAATTCTTTACTTTCTAAAACAATGCGGCTGTACAATACAAACTATCGGCTTCTTATCACTGGCACACCTCTTCAGAACAATCTCCATGAGCTCTGGTCCCTTCTCAATTTTCTTCTTCCCGAAATTTTTAGTTCTTCTGAAACTTTTGATGAGTGGTTTCAAATCTCTGGTGAAAATGACCAGCAAGAGGTCGTTCAACAACTGCATAAGGTCCTCCGTCCATTTCTCCTTCGAAGGTTAAAGTCAGATGTTGAGAAGGGTTTGCCACCAAAAAAAGAAACCATTCTCAAAGTAGGAATGTCACAAATGCAGAAACAATATTACAAGGCTTTACTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAGCGAAAACGTCTTCTGAATATAGCTATGCAACTGCGTAAATGTTGTAATCACCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCTTATACAACTGGGGATCATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAATTGCTGCCTAAATTAAAAGAGCGAGACTCTAGGGTGCTTATATTTTCACAGATGACCAGGCTACTAGACATACTTGAAGATTACTTGATGTTTCGGGGATATCAATATTGTCGTATTGATGGTAATACTGGTGGAGAAGATCGTGATGCTTCTATTGACGCTTTCAATAAACCTGGGAGTGAAAAATTTGTCTTCTTATTGTCGACTCGGGCCGGAGGTCTTGGCATTAATCTTGCTACTGCAGATGTTGTCATTCTATATGACAGTGATTGGAACCCACAAGTTGACTTACAGGCCCAGGACCGGGCTCATAGGATTGGCCAAAAGAAAGAAGTTCAAGTTTTCCGTTTCTGCACTGAGTATACCATTGAGGAAAAAGTCATTGAAAGAGCTTACAAAAAACTCGCACTCGATGCACTGGTGATTCAACAAGGGCGATTAGCTGAGCAGAAGACTGTAAATAAAGATGAGTTGCTTCAAATGGTCAGATTTGGTGCTGAAATGGTTTTCAGTTCAAAGGATAGTACAATTACAGATGAGGATATTGACAGAATTATCGCTAAAGGAGAAGAAGCAACAGCTGAACTTGACGCCAAGATGAAGAAATTTACTGAAGATGCAATCAAGTTTAAGATGGATGACAATACTGAATTGTATGATTTTGATGATGATAAGGACGAGAACAAATTTGATTTCAAGAAGATTGTCAGTGAAAATTGGATTGAGCCACCAAAAAGAGAGCGGAAGCGCAATTACTCAGAGTCTGAATACTTCAAGCAAACAATGCGCCAAGGTGGTCCTACAAAACCCAGAGAGCCCCGTATTCCCAGGATGCCTCAGCTGCATGATTTCCAGTTCTTCAACACACAAAGGTTAAGTGAGCTGTATGAAAAGGAAGTGCGCTATCTCATGCAAACCCATCAAAAGAATCAGGTAAAGGACTCCATTGATGTTGATGAATCAGAAGAGGTGGGAGATCCTTTGACTGCTGAGGAGCTGGAAGAAAAAGAACGCCTGCTAGAAGAGGGATTTTCATCATGGAGCCGAAGAGATTTCAACACTTTCATTAGGGCATGTGAAAAGTATGGTCGAAATGATATCAAAAGTATTGCTTCTGAGATGGAAGGTAAAACAGAGGAGGAAGTTGAAAGATATGCTAAGGTCTTCAAGGAGAGATACAAGGAATTAAATGATTATGATCGAATTATTAAAAATATTGAAAGAGGAGAGGCTAGAATATCACGTAAAGATGAGATTATGAAAGCTATCGGGAAGAAGCTGGACCGCTATAAGAATCCATGGCTAGAGTTGAAGATACAATATGGCCAAAACAAGGGGAAGTTATACAATGAAGAATGTGATCGATTCATGATATGCATGGTTCACAAACTTGGTTATGGGAACTGGGATGAGCTGAAGGCAGCATTCCGCACATCACCCCTGTTTCGGTTCGATTGGTTTGTCAAGTCTCGCACAACACAGGAACTTGCGAGGAGATGTGACACACTCATTCGGTTGGTAGAGAAGGAAAACCAAGAATTTGATGAGCGGGAGAGACAAGCTCGTAAAGAGAAGAAACTTGCTAAGAACAACATGACCCCTTCAAAACGTGCATTGGCAAGACAGTCGGATGGTCCATCTTCTCTGAAGAAGCGCAAGCAATCAACTATGGACGACTATGTCAGCTCGGGAAAGAGGAGGAAGTAG 3228 0.4195 MARRSKGQASSDEAMSNGSTSSEEERVNEQINDEEDEEELEAVARSASSNDNDDEAADGDAPDSDEDAAAAGDVDEEELDDGNVDPEIRKREKARLREMQKLKKQKIQEMLDKQNATIDADMNNKGKGRLKYLLQQTELFAHFAKGDPSTSLKKSKGRGRHASKVTEEEEDEEYLKEEEDGLAGNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPEERRHIREELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSSETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDNTELYDFDDDKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPREPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQVKDSIDVDESEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEFDERERQARKEKKLAKNNMTPSKRALARQSDGPSSLKKRKQSTMDDYVSSGKRRK 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5817g00026 1075 CDD DEXHc_SMARCA1_SMARCA5 196 416 IPR044754 GO:0005524
Pral5817g00026 1075 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 850 904 - -
Pral5817g00026 1075 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 762 852 IPR036306 GO:0003677|GO:0006338|GO:0031491
Pral5817g00026 1075 Gene3D - 420 712 IPR027417 -
Pral5817g00026 1075 MobiDBLite consensus disorder prediction 1 93 - -
Pral5817g00026 1075 MobiDBLite consensus disorder prediction 1053 1075 - -
Pral5817g00026 1075 MobiDBLite consensus disorder prediction 1023 1038 - -
Pral5817g00026 1075 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 504 655 IPR001650 -
Pral5817g00026 1075 Pfam HAND 763 845 IPR015194 GO:0003677|GO:0006338|GO:0031491
Pral5817g00026 1075 Gene3D - 850 904 - -
Pral5817g00026 1075 ProSiteProfiles SANT domain profile. 849 901 IPR017884 -
Pral5817g00026 1075 SMART helicmild6 530 614 IPR001650 -
Pral5817g00026 1075 FunFam ISWI chromatin-remodeling complex ATPase CHR11 938 1042 - -
Pral5817g00026 1075 CDD SANT 853 897 IPR001005 -
Pral5817g00026 1075 Gene3D - 200 415 IPR038718 -
Pral5817g00026 1075 Coils Coil 1011 1038 - -
Pral5817g00026 1075 Gene3D ISWI, HAND domain 751 849 IPR036306 GO:0003677|GO:0006338|GO:0031491
Pral5817g00026 1075 MobiDBLite consensus disorder prediction 53 82 - -
Pral5817g00026 1075 SMART ultradead3 195 387 IPR014001 -
Pral5817g00026 1075 Pfam SNF2-related domain 212 479 IPR000330 GO:0005524|GO:0140658
Pral5817g00026 1075 SMART sant 952 1013 IPR001005 -
Pral5817g00026 1075 SMART sant 850 899 IPR001005 -
Pral5817g00026 1075 Coils Coil 89 109 - -
Pral5817g00026 1075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 698 IPR027417 -
Pral5817g00026 1075 MobiDBLite consensus disorder prediction 9 25 - -
Pral5817g00026 1075 Pfam SLIDE 907 1017 IPR015195 GO:0003677|GO:0005634|GO:0006338
Pral5817g00026 1075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 414 IPR027417 -
Pral5817g00026 1075 Gene3D iswi atpase 905 937 - -
Pral5817g00026 1075 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 94 1066 - -
Pral5817g00026 1075 FunFam ISWI chromatin-remodeling complex ATPase CHR11 751 849 - -
Pral5817g00026 1075 FunFam ISWI chromatin-remodeling complex ATPase CHR11 420 712 - -
Pral5817g00026 1075 MobiDBLite consensus disorder prediction 1023 1075 - -
Pral5817g00026 1075 Pfam Helicase conserved C-terminal domain 502 614 IPR001650 -
Pral5817g00026 1075 FunFam Chromatin-remodeling complex ATPase 200 415 - -
Pral5817g00026 1075 Gene3D - 938 1041 - -
Pral5817g00026 1075 SUPERFAMILY Homeodomain-like 905 1027 IPR009057 -
Pral5817g00026 1075 SUPERFAMILY Homeodomain-like 853 903 IPR009057 -
Pral5817g00026 1075 MobiDBLite consensus disorder prediction 146 179 - -
Pral5817g00026 1075 CDD SF2_C_SNF 500 625 - -
Pral5817g00026 1075 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 211 376 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5817g00026 Pral-Chr5817 183888 192040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5817g00026 220 641 RAD5 or RAD16-like Gene Family AT1G02670 27.129 5.30e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral5817g00026 SNF2_N 3.8e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5817g00026 K11654 - rcu:8262399 1907.11