Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5817g00016 ATGTCCACCTCTAGAACCCTAGATTCTTCCTCTTCTTCTTCTTCTTCTTCATCACCATCCTTCAAGGGCTATGAAGCAAACCAGACCCAGATGGTTCTGTCTCTACTTCAGAGAAACACATCTCCTTGTGCTGGTGAGAAAAGAGGCAGAAGGAAGCAATCAGAACCGGGAAGGTTTCTTGGTGTCAGAAGAAGACCTTGGGGAAGATACGCTGCAGAAATAAGGGACCCCACAACTAAAGAAAGGCATTGGCTTGGAACTTTTGACACTGCACAAGAAGCTGCGCTGGCTTATGACAGAGCTGCTCTGTCCATGAAAGGAGGCCAAGCAAGAACAAATTTTATATATTCTGACACTAACACTACTTTTCAAACTCTTCTTTCTCCTTTAGATGGTCAAGCTCTTTTACCAACCTATCAGAGTAGTGCTAGTGCAGTATCTGATATGCATCATCCTAATCCTTCTCATTCCACCCACCTTCATCAGATTGAGCCTAATCTTCCTACCCAGATGAACAACGACATGCCTGAAACTGAAAACTCTTTCTTGTTTCCCAGTGATTCTAACTCAGGATACTTGGAATGTGTGGTTCCTGATAACTGTCTCAGAAGGAGTAATGAGAGTGCTTCAAGTGAGCAAAAGGGCCAATCTCAACAACAAGGCATCAATATACCAACAGTGGCCTGTGAAAGTTCAGATTTTTCTTCATACCCAGATGAAATCTCTCAGGGACTGTCATGGGATTCTGATTGCAGTGAGCTTTCTGCTATGTTCAAGAGCAACCCAATGAGGGTTGAAGAAGATGGGTGCTTCAATGGGAGTACTGGATTCAGTTCAAGCTACGGACTAATGACTGATCAATATGGTTCTGGTTCAACTTCTTCATATGCCTTTGGAGATGTTGATATGGGATACTCCATGTTCTGA 927 0.4337 MSTSRTLDSSSSSSSSSSPSFKGYEANQTQMVLSLLQRNTSPCAGEKRGRRKQSEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGGQARTNFIYSDTNTTFQTLLSPLDGQALLPTYQSSASAVSDMHHPNPSHSTHLHQIEPNLPTQMNNDMPETENSFLFPSDSNSGYLECVVPDNCLRRSNESASSEQKGQSQQQGINIPTVACESSDFSSYPDEISQGLSWDSDCSELSAMFKSNPMRVEEDGCFNGSTGFSSSYGLMTDQYGSGSTSSYAFGDVDMGYSMF 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5817g00016 308 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
Pral5817g00016 308 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Pral5817g00016 308 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Pral5817g00016 308 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Pral5817g00016 308 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 32 232 - -
Pral5817g00016 308 FunFam Ethylene-responsive transcription factor 2 58 116 - -
Pral5817g00016 308 Pfam AP2 domain 61 107 IPR001471 GO:0003700|GO:0006355
Pral5817g00016 308 SUPERFAMILY DNA-binding domain 59 116 IPR016177 GO:0003677
Pral5817g00016 308 CDD AP2 58 114 IPR001471 GO:0003700|GO:0006355
Pral5817g00016 308 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Pral5817g00016 308 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5817g00016 Pral-Chr5817 99579 100793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5817g00016 1 215 AP2-EREBP Transcription Factor Family AT5G18560 43.369 3.47e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral5817g00016 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5817g00016 - - gmx:100793333 288.5