Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5817g00015 ATGGAGCGGTACGGCCGGACCAGTGAAGGGTCGCAGTCTGATCCGTCACCGGAATGGACCGGAACGGGAGGCGAAACAGGGCTCGAAGAGCCAGTGTGGCAATTGGAATTGGGTGGCGGTGAATCGTACCCGCAACGGCCCGATGAGGCTGATTGTATATACTATTTGAGGACTGGTTATTGTGGGTACGGCTCGCGATGTCGGTTCAATCATCCCCGAGACCGTGGCGCGGTTATTGGAGCTGCGAGGACTCTAGGGGAGTACCCAGAACGACTAGGCCAGCCTGTATGCCAGTATTATATGAGGACAGGATCTTGCAAATTTGGCCCGTCCTGCAAGTATCATCATCCTAGGCAGGGAGGAGGCACTGGTAGCCCTGTGTCACTAAATTATTATGGATTTCCATTGCGACCGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCACCATCCGCAGCCTGATGGTATGCAAATTCCAGCACAAACACCAGTTCCTCCGGTTTCACCTCTACCTGTACCAGTACCTTCACCCTTGTATCCAACTGTACAGCCTCCATCCGGCCCTTCATCATCACAATATGGTGTAATGGTTGCAACTCCAAGGCCACCTCTGCTACCTGGCTCATTGGTCCATAGTCCCTATGGGCATGTGGTTTGGTCCCCAGCTGTAGTCCCTTTTCCAGGTTGGAGTCATTATCAGCCTCCTGCAAGCCCCTTGGTTCCCTCAAGTACTCCATCTAATGTTGGTTCGGCACAGCATTATGGGATAGCCCAGCTACCTTCACCAGCATCAACTTATACCGGACAGTATCAACCTTCAGGCTCCTCAATTGGTCCTTCAGGCAGTGGTCACAAGGAACACTCGTTTCCACAAAGACCTGGTCAGCCAGAATGTCAATATTATATGAGAACGGGGGAGTGTAGATTTGGCCCATCGTGTAGATATCACCATCCACCTGAATTAGTTGCTCCAAAAACAAATGTGGTCCTTAGTCCTGTGGGCCTTCCTTTGCGCCCGGGCGCACCTCCTTGCACTCATTATGCACAGCGTGGGGTGTGTAAATTTGGCCCAGCATGCAAATTTGATCATCCTATTGGAGCACTGAGTTATAGTCCATCTGCTTCCTCCCTAGCTGATATGCCGGTTGCACCCTATCCTGTGGGCTCTTCAATTGGCACTCTTGCTCCTTCATCTTCATCATCAGAATTGCGGCCTGAACTCACCTCAGGATCTGGCAAGGAGTCTGCATCATCCAGAATATCTTCATCAATGAGCACATCAACGGCATCAGTTGGCTTGACCTTGTCATCTGTTGGATCCATTAATCAATCAACTGCTCAACAATCTGCTCAGAGTTCCAGTCCTTCAGCAATCCCCAATAGCAGCACAAGCAGCTCCGTCCTTCACACCTCTAGTTAA 1455 0.5052 MERYGRTSEGSQSDPSPEWTGTGGETGLEEPVWQLELGGGESYPQRPDEADCIYYLRTGYCGYGSRCRFNHPRDRGAVIGAARTLGEYPERLGQPVCQYYMRTGSCKFGPSCKYHHPRQGGGTGSPVSLNYYGFPLRPGEKECSYYVKTGQCKFGATCKFHHPQPDGMQIPAQTPVPPVSPLPVPVPSPLYPTVQPPSGPSSSQYGVMVATPRPPLLPGSLVHSPYGHVVWSPAVVPFPGWSHYQPPASPLVPSSTPSNVGSAQHYGIAQLPSPASTYTGQYQPSGSSIGPSGSGHKEHSFPQRPGQPECQYYMRTGECRFGPSCRYHHPPELVAPKTNVVLSPVGLPLRPGAPPCTHYAQRGVCKFGPACKFDHPIGALSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELTSGSGKESASSRISSSMSTSTASVGLTLSSVGSINQSTAQQSAQSSSPSAIPNSSTSSSVLHTSS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5817g00015 484 FunFam CCCH type zinc finger protein 302 387 - -
Pral5817g00015 484 Gene3D - 44 124 - -
Pral5817g00015 484 Gene3D - 293 378 - -
Pral5817g00015 484 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
Pral5817g00015 484 FunFam Zinc finger nuclease 2 45 122 - -
Pral5817g00015 484 SUPERFAMILY CCCH zinc finger 354 380 IPR036855 GO:0046872
Pral5817g00015 484 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Pral5817g00015 484 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Pral5817g00015 484 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Pral5817g00015 484 SMART c3hfinal6 137 164 IPR000571 GO:0046872
Pral5817g00015 484 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Pral5817g00015 484 MobiDBLite consensus disorder prediction 406 438 - -
Pral5817g00015 484 SUPERFAMILY CCCH zinc finger 94 118 IPR036855 GO:0046872
Pral5817g00015 484 MobiDBLite consensus disorder prediction 454 484 - -
Pral5817g00015 484 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Pral5817g00015 484 PANTHER PROTEIN PHOSPHATASE RELATED 37 413 - -
Pral5817g00015 484 SUPERFAMILY CCCH zinc finger 308 332 IPR036855 GO:0046872
Pral5817g00015 484 MobiDBLite consensus disorder prediction 274 294 - -
Pral5817g00015 484 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Pral5817g00015 484 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Pral5817g00015 484 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872
Pral5817g00015 484 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Pral5817g00015 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 164 IPR000571 GO:0046872
Pral5817g00015 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 353 376 IPR000571 GO:0046872
Pral5817g00015 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Pral5817g00015 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Pral5817g00015 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872
Pral5817g00015 484 Gene3D - 125 170 - -
Pral5817g00015 484 MobiDBLite consensus disorder prediction 1 30 - -
Pral5817g00015 484 MobiDBLite consensus disorder prediction 274 307 - -
Pral5817g00015 484 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5817g00015 Pral-Chr5817 89244 95940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5817g00015 1 437 C2H2 Transcription Factor Family AT5G18550 56.957 6.73e-155 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral5817g00015 zf-CCCH 3.7e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5817g00015 - - qsa:O6P43_003530 663.685