Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5809g00019 ATGGACGAAGATTTGCTTAAGCGAAACACCGATTGCGTCTATTTTTTGGCTTCCCCCCTCACTTGCAAGAAGGGGGTTGATTGTGAGTATCGGCATAATGAAATTGCGAGGCTAAACCCAAGGGATTGCTGGTACTGGTTATCTGGGAACTGCCTTAATCCAACATGTGCTTTTAGACATCCTCCATTGGAAGGGCATACTGGAGTGCCATCTGAGCCTACACAATCTTCTTTACCTGCAAACAAGACAGTTCCCTGTTATTTTTTCTTCAATGGATTTTGCAATAAAGGTGACAGATGTTCATTTTTGCATGGGCCTGATTATAGCTCTTTTCCCGGTAAGGCTGGGAAGAACGACTGTGGAAGTAATGATGCCCTGCCTTCAGAAAATAAAACGTCATCTGGAAATAAAGCAGGTGTAGCAATGACAACTGAGACATGTCCTGATCCATCTGAAATTGCCCCAAAGGCTCTGCATAATTGTAAAATTGAACCTGTAGAAGATCCTCAGCGATCAATACTAAAAAATCTTAAACAGCAAAATACTTCACCAGAGATATCTGCTTATGAATATAAAGAAGCCACTGTTATAAGGCCTGACCCTGTATATCCAGATAAGGACTTTATACATGGCATTTCCCATATGTGCACTGATCAGAGTCCGGATGAGCGAGTGCATAATCACATGGAACCTGAGGAACGATTGGAATCGCCCCCTGGATTTGATGTTCTTGTTGATGATGAAATGGAGAGCCCTACCTATGGGGATGATTCTGAATATTTACCAGTCGACAGAGAATACCAGGAATTGAATGGGCAGTACCTGCAGTATGAATTTAAGGACACTGTTGAGTATGATCCCGAATGCTCTGAAGCTGAAGCTGATATTTTGTATGAAGAGATGCATGGTGGTTACAGATTTATGGATGGTGATCATATTCTTGCTGATGACAGAAGAGTTCCTGCTTTTTCCAGAGAGAGAATCATAGACTCTATATTGTCCAGGAAGAGGATTCGGATGCCAGCTGAAATGACTGCTTGTAACAGAAACTTAGATCTACGAGACCATCTGAGGAGACGAAGGGAAATTAATGGTGGACCTGTTACAGGCTTTTTAAGAAGACGTGAATCATCTTGTATGGTTATTCAGAACCGAGAAAGGCTAAGAAGACATGGTAGTTTTGATCAGAGGCTTAGTAGAAGATTGACGTCTGCGGTGGGATTTAACACTATAGCCTCAAATGGAGAGGATGAAACTCGTTCAATTTCTAATAGGCACAGGTTATTTAGGCACCCTCTGCAACATTCATCAAGGAAACCGCAGCATTATAGAGAGAACCGGGGTAAACGGCAGTTTGTTCCGTCTAAAATCTTCAGGAATCCATTTTCAAAGCAAAGGCGATATACGGCATCTACTGACATCAGATTTCACGGACCAAAGAGTCTAGCAGAAATCAAAGAGGAGAAGGCGACAGCTGCAGAAAGAGGGCATTTCAATAGTACTTCAACTGACTTCCAGGATCCCAAACCTCTAAGTGAAATCCTCAAGGACAAAAAGAGGTTGGATTGTGGGTGA 1575 0.4241 MDEDLLKRNTDCVYFLASPLTCKKGVDCEYRHNEIARLNPRDCWYWLSGNCLNPTCAFRHPPLEGHTGVPSEPTQSSLPANKTVPCYFFFNGFCNKGDRCSFLHGPDYSSFPGKAGKNDCGSNDALPSENKTSSGNKAGVAMTTETCPDPSEIAPKALHNCKIEPVEDPQRSILKNLKQQNTSPEISAYEYKEATVIRPDPVYPDKDFIHGISHMCTDQSPDERVHNHMEPEERLESPPGFDVLVDDEMESPTYGDDSEYLPVDREYQELNGQYLQYEFKDTVEYDPECSEAEADILYEEMHGGYRFMDGDHILADDRRVPAFSRERIIDSILSRKRIRMPAEMTACNRNLDLRDHLRRRREINGGPVTGFLRRRESSCMVIQNRERLRRHGSFDQRLSRRLTSAVGFNTIASNGEDETRSISNRHRLFRHPLQHSSRKPQHYRENRGKRQFVPSKIFRNPFSKQRRYTASTDIRFHGPKSLAEIKEEKATAAERGHFNSTSTDFQDPKPLSEILKDKKRLDCG 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5809g00019 524 MobiDBLite consensus disorder prediction 510 524 - -
Pral5809g00019 524 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 82 106 IPR000571 GO:0046872
Pral5809g00019 524 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Pral5809g00019 524 Pfam Zinc-finger containing family 7 63 IPR041686 -
Pral5809g00019 524 FunFam Zinc finger CCCH domain-containing protein 17 1 63 - -
Pral5809g00019 524 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 523 - -
Pral5809g00019 524 MobiDBLite consensus disorder prediction 489 524 - -
Pral5809g00019 524 ProSiteProfiles Zinc finger C3H1-type profile. 80 107 IPR000571 GO:0046872
Pral5809g00019 524 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Pral5809g00019 524 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Pral5809g00019 524 SMART c3hfinal6 80 106 IPR000571 GO:0046872
Pral5809g00019 524 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Pral5809g00019 524 Gene3D - 72 162 - -
Pral5809g00019 524 Gene3D - 3 64 - -
Pral5809g00019 524 SUPERFAMILY CCCH zinc finger 80 107 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5809g00019 Pral-Chr5809 293209 297103 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral5809g00019 zf-CCCH_3 5.7e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5809g00019 - - aprc:113847503 629.402