Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5809g00018 ATGACATCCTCTTACGTTTCAATTTCTGAAGCCTTAGCCGAAGATACATTTGATATCAGTTTTACCATTGTCCAACGTGGGATTTCACCAGGCACAGGATCCCTCCCAATAACATCCTTTGAACTATTTCCATCTCCATTCACTATGCCTTGTGAAGAATTAATTCGAGACGTTCCGAGGTTTCTTCGCTCTAACGCAGCCGATTATCTTTCCCAACACGATTTCGAGTCACTCGCATCGAAAATCATATCTTATTACCAAGAAATAATCCAACGTGCCTCCATTCCTCCATCATTAACTCTTACTCATCATCGCTTCATACCCTTAATTGTGTATCTTCATGTCAGTACTTCTGATGACGATGATCACGGCATAGTACCTTTTTCTTTTCATCTTCAAACTACCGCTCTATATGCAGATAATGAGTACATGACATATATTGATGATGATGATGAGACCTATCATTCCATAGAGCAATCCATGCAACAACATTATGATGATCATCAAAGTACCTTTCTATCTGGAGACCATTATCATCGACATATGTCGGATGATGAGGAGGAGGATGACGATGATGACGAGTCAGCAGAAATATATCAAGTCATTGAGCAATCTATAGAACATCTGTTCATAGTTCCTGCAACTCAAGAGGCTATAATGTCACTCAAGAAGCTAATGATGTCCAGTGATGAGGCAAAGGGGAGTCAATGTAGCATTTGTTTAGAAAATTTTGATGATAACGTAGACGAAGACGATGACTTTTTAGCATTACCTTGTGATCATTTTTTCCATAGTGATTGTATCGTAAAGTGGCTAAAAACAGGCCATACATGTCCGTTGTGTCGCTTTGAATTGGCTGTAGACTGA 867 0.3933 MTSSYVSISEALAEDTFDISFTIVQRGISPGTGSLPITSFELFPSPFTMPCEELIRDVPRFLRSNAADYLSQHDFESLASKIISYYQEIIQRASIPPSLTLTHHRFIPLIVYLHVSTSDDDDHGIVPFSFHLQTTALYADNEYMTYIDDDDETYHSIEQSMQQHYDDHQSTFLSGDHYHRHMSDDEEEDDDDDESAEIYQVIEQSIEHLFIVPATQEAIMSLKKLMMSSDEAKGSQCSICLENFDDNVDEDDDFLALPCDHFFHSDCIVKWLKTGHTCPLCRFELAVD 288
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pral5809g00018 288 MobiDBLite consensus disorder prediction 176 195 - -
Pral5809g00018 288 SUPERFAMILY RING/U-box 236 286 - -
Pral5809g00018 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 287 IPR013083 -
Pral5809g00018 288 SMART ringv_2 236 282 IPR011016 GO:0008270
Pral5809g00018 288 ProSiteProfiles Zinc finger RING-type profile. 237 282 IPR001841 -
Pral5809g00018 288 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 167 285 - -
Pral5809g00018 288 SMART ring_2 237 281 IPR001841 -
Pral5809g00018 288 Pfam Ring finger domain 236 282 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pral5809g00018 Pral-Chr5809 291587 292453 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5809g00018 197 285 C3H Transcription Factor Family AT1G18760 32.609 3.85e-14 68.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5809g00018 - - pcin:129298469 242.662