Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5804g00016 ATGGCGAGACGACCGAGACAGAAGAACAGGAAGCTGATCGCCGACCCCAGAACCAAGCATACCACCTTCTCCAAGCGCCGGTGTTCCATCTTCCAGAAAGCCAGCGAGCTCTGTACTTTGTGCGCCGTCGAGATGGCTCTCGTCATCTTCTCTCCCGGCGGCAAACCCTACTCGTTCGGCCATCCTTCTACTGATGCAGTAATCGACAGACTCATCACTGGTTCTGCAGATCCCATCCTCCGTAATTCTTCTGAAGAAGAAAAGGCCCAGCGAGAAGCGATCATGGCGGAGCTGGACAAGGAGTACAGCGATCTGAATGCGCAGTTGAAGGAAGAGAAGGAACGAGGCAAGGAGCTGAACCAGGAGATGAAGAATCTTCCAGATATCGAGAAGATGAGCAGAGATGAGCTGATGAAGTTGAAGGAATCACTTGAAGCTCTGAGAGTGAAAATACGCAGTCGTAAAGAGGAGCTTTTGGCTGGGAAGGGTACTGGGGATGATGATGATCTGAGATTAACGTTGGGTGGTGTATTTTCTGGAGGAGAAGCTTCTTCTTCAAGCTCTGCAAAAACTGATCATCATCATCAGGCCGGAGAAGAAGATTTTTCTGCAAATGCCGACGATGGAGATGATGGTGATCTTAGTCTGAATCTATCACCTTTTGTTCCCGGTGATGCATAA 681 0.4949 MARRPRQKNRKLIADPRTKHTTFSKRRCSIFQKASELCTLCAVEMALVIFSPGGKPYSFGHPSTDAVIDRLITGSADPILRNSSEEEKAQREAIMAELDKEYSDLNAQLKEEKERGKELNQEMKNLPDIEKMSRDELMKLKESLEALRVKIRSRKEELLAGKGTGDDDDLRLTLGGVFSGGEASSSSSAKTDHHHQAGEEDFSANADDGDDGDLSLNLSPFVPGDA 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5804g00016 226 ProSiteProfiles MADS-box domain profile. 11 63 IPR002100 GO:0003677|GO:0046983
Pral5804g00016 226 MobiDBLite consensus disorder prediction 188 202 - -
Pral5804g00016 226 Coils Coil 137 157 - -
Pral5804g00016 226 FunFam Agamous-like MADS-box protein AGL62 15 79 - -
Pral5804g00016 226 PANTHER MADS BOX PROTEIN 6 151 - -
Pral5804g00016 226 SMART madsneu2 2 62 IPR002100 GO:0003677|GO:0046983
Pral5804g00016 226 Coils Coil 81 126 - -
Pral5804g00016 226 SUPERFAMILY SRF-like 10 83 IPR036879 GO:0003677|GO:0046983
Pral5804g00016 226 PRINTS MADS domain signature 5 25 IPR002100 GO:0003677|GO:0046983
Pral5804g00016 226 PRINTS MADS domain signature 25 40 IPR002100 GO:0003677|GO:0046983
Pral5804g00016 226 PRINTS MADS domain signature 40 61 IPR002100 GO:0003677|GO:0046983
Pral5804g00016 226 Gene3D - 16 88 IPR036879 GO:0003677|GO:0046983
Pral5804g00016 226 MobiDBLite consensus disorder prediction 160 226 - -
Pral5804g00016 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5804g00016 Pral-Chr5804 82955 83635 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5804g00016 6 160 Type I MADS-box Gene Family AT2G34440 35.185 6.72e-26 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral5804g00016 SRF-TF 2.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5804g00016 - - pcin:129297271 254.988