Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5802g00006 ATGTTCAACTCCTGCTACAATTCATACGGCCAGAGGGATAAATTTGTGAGGTTGGATGATCTTGATTCTAACACTTCAGTACAATCCAGCCCAAGTGGAATCATGAAGAAGCTCAGATTTAATATAGAGGGCAAGCCCATTTCTGGTCGTGAAAATAAGAATGCATCAAAATCCTTTAGGATGGGAATGAAGAGAGGATCAGATGGACTAAAGACATTTGGAAGATCACTGAAAAGTGGAGTCACCTGGCAAGTTTTCCCAGAAGATCTTAAAGTATCAGAGACTAAAATATTTGATCCTCAAGATAAGACCCTTTTGTTGTGGAACAAGTTTTTTGAGCTTCTATGTATTATTTCTGTGTCATGTGATCCTCTCTTCTTTTATCTTCCCTACTTCAACCTCAGATCTCACTGCCTTGCCATTGATACTGCTCTTGCATCTACTGCTATTATTCTGAGATCGGTACTTGATGCTATCTATCTCATCCGCATGGGTTTCCAATTCCGGACTGCTTATATTGCACCATCCTCTCGGGTTTTTGGACGAGGTGAACTTGTCATTGATCCTAAAAAGATTGCCAAGAGATACCTTGGGCGTTACTTCATTGTTGATTTCAGTTCTGTGCTGCCATTGCCACAGATTGTGGTGGCCAACTATCTTCAAAAAGCAAAAAGTTTAGAGGTGTTAGCCACAAAAACGACGCTATTGAGAGTGGTCATCCTCCAATATATTCCGAGATTTGCACGCTTTATCCCTTTAGCTACTGAAGTTAAAAAGACAGCTGCTGTCTTCTCTGATAATGCACTCGTGGGTGCCACCTACTATTTGGTTTGGTACATGCTTGTTAGCCATGTAAGTCCATCTTTCATGAATTCACACATGTCATTATGTTTCAATATGATAGGGTCTGTGTGGTACTTACTAGCTATCGAACGAAATGACACGTGTTGGCAGAAGGCTTGTGCTGCTGCTGTTACTCAAGGATGTATTCCACATTTCTTATACTGTGAGAGTTCAAATAGGCGCCATCCTGGATATGAAGCCTGGAAAAATGTGAATGGGGATATTCTTGACAGGAATTGTGGAGCTGGGGGTGAGGACCCACCATTTGATTATGGAATCTACACTCGTGTGATAGAGAAGGGTATTACTGCCTCCAGTGATATGTGGAGTAAATTCTTTCTATGTTTCTGGTGGGGCCTTCAAAACGTCAGCACACTTGGGCAGGGGCTTGACACGAGTACTTACATCGGGGAGGCTTTGTTTTCCATATTTATATGTATTTTGGGGCTTGTCCTTATGGCTCTTCTGATTGGAAAAGTGCAGAACTACCTTCAATCAATCACTGTTCGTCTTGAGGAAATGAGGATCAAAAGGCGTGATTCTGAGCAGTGGATGCATCACCGTGTGCTTCCTCAAGAGCTAAGGGAAAGAGTGAGACGCTATGATCAATACAAATGGATGGAAACTCGAGGAGTCGACGAAGAGAACTTGGTGCAGAATCTTCCAAAAGATCTAAGGAGGGATATCAAACGCCATCTTTGTTTGAACTTGGTTAGAAGGGTTCCTCTCTTCGCTAATATGGACGAACGCTTACTGGATGCAATTTGTGAGCGTTTAAAACCAAGTTTATACACAGAGGGAACATACATTGTTAGGGAAGGAGATCCAGTAGTTGAGATGTTCTTCATCATACGTGGTCGTTTAGAGAGTGTGACCACAGATGGTGGAAGAAGTGGATTTTTCAACAGAGGTCTTCTCAAAGAAGGTGATTTCTGTGGAGAAGAGCTTCTGACATGGGCATTAGACCCTAAATCTGCAGCAAACTTGCCATCATCTACAAGAACAGTGAAAGCTATCAATGAAGTAGAGGCATTTGCTTTGGAAGCAGAGATGTTAAAGTTTGTGGCTTCACAGTTCAGGCGCCTCCATAGCAGACAAGTTCAACAGACCTTCCGTTTCTACTCACAGCAATGGAGAACATGGGCAGCAACTTTCATCCAGGCTGCATGGCGACGGTATATGAAAAGGAAGATGATGGAGTCACAACTAATAGAGGAGGAGGAGGAGGAGATGGAGGATGAGGATGAAGACTATGGCTCAGATGACGATGGAAAAGCTTTGATTTCAAGAACTGAAAGTTCATCCAGGGCTGGATTTGGTTCAACCATTTATGCTTCTCGCTTTGCTGCTAAAGCCCTTCGTGGTCGTAAGCTTCGTTCTCTCCAAAAGCCTCCAGAACCTGACTTCAGTGTTTATGATCATAGACATTGA 2274 0.4279 MFNSCYNSYGQRDKFVRLDDLDSNTSVQSSPSGIMKKLRFNIEGKPISGRENKNASKSFRMGMKRGSDGLKTFGRSLKSGVTWQVFPEDLKVSETKIFDPQDKTLLLWNKFFELLCIISVSCDPLFFYLPYFNLRSHCLAIDTALASTAIILRSVLDAIYLIRMGFQFRTAYIAPSSRVFGRGELVIDPKKIAKRYLGRYFIVDFSSVLPLPQIVVANYLQKAKSLEVLATKTTLLRVVILQYIPRFARFIPLATEVKKTAAVFSDNALVGATYYLVWYMLVSHVSPSFMNSHMSLCFNMIGSVWYLLAIERNDTCWQKACAAAVTQGCIPHFLYCESSNRRHPGYEAWKNVNGDILDRNCGAGGEDPPFDYGIYTRVIEKGITASSDMWSKFFLCFWWGLQNVSTLGQGLDTSTYIGEALFSIFICILGLVLMALLIGKVQNYLQSITVRLEEMRIKRRDSEQWMHHRVLPQELRERVRRYDQYKWMETRGVDEENLVQNLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEGTYIVREGDPVVEMFFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKSAANLPSSTRTVKAINEVEAFALEAEMLKFVASQFRRLHSRQVQQTFRFYSQQWRTWAATFIQAAWRRYMKRKMMESQLIEEEEEEMEDEDEDYGSDDDGKALISRTESSSRAGFGSTIYASRFAAKALRGRKLRSLQKPPEPDFSVYDHRH 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5802g00006 757 Gene3D - 114 450 - -
Pral5802g00006 757 Gene3D Helix hairpin bin 452 515 - -
Pral5802g00006 757 CDD CAP_ED 524 655 IPR000595 -
Pral5802g00006 757 MobiDBLite consensus disorder prediction 685 716 - -
Pral5802g00006 757 FunFam Cyclic nucleotide-gated ion channel 1 522 640 - -
Pral5802g00006 757 SMART cnmp_10 524 655 IPR000595 -
Pral5802g00006 757 Gene3D Jelly Rolls 522 642 IPR014710 -
Pral5802g00006 757 ProSiteProfiles cAMP/cGMP binding motif profile. 524 607 IPR000595 -
Pral5802g00006 757 ProSiteProfiles IQ motif profile. 660 689 IPR000048 GO:0005515
Pral5802g00006 757 SUPERFAMILY Voltage-gated potassium channels 100 446 - -
Pral5802g00006 757 Pfam Ion transport protein 107 451 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pral5802g00006 757 Pfam Cyclic nucleotide-binding domain 545 633 IPR000595 -
Pral5802g00006 757 MobiDBLite consensus disorder prediction 737 757 - -
Pral5802g00006 757 FunFam Cyclic nucleotide-gated ion channel 1 451 515 - -
Pral5802g00006 757 MobiDBLite consensus disorder prediction 740 757 - -
Pral5802g00006 757 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 88 750 - -
Pral5802g00006 757 Coils Coil 675 698 - -
Pral5802g00006 757 SUPERFAMILY cAMP-binding domain-like 454 644 IPR018490 -
Pral5802g00006 757 MobiDBLite consensus disorder prediction 685 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5802g00006 Pral-Chr5802 53320 57908 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5802g00006 1 750 Ion Channels AT1G15990 64.791 0.0 952
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5802g00006 K05391 - gmx:100810453 1045.8