Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5802g00003 ATGGACAGCCAAGCAGACAAGACCCAGAAACAGACAGAAACAGAGGATCAACAATGCCAACAACGTAGTTCATCTTCTTCTTCCCCTCCTCCTCGTCTAGATCTAAGTCTCTCTAATTACTCCTCATCTGAATCCCCCCATGGCAGGATCTTCTCCTGCAACTACTGTCACAGAAAATTCTACAGCTCGCAGGCACTTGGGGGACACCAAAACGCACACAAGCGTGAGAGAACTCTGGCCAAAAGAGGACACAACAACGACGTTGGTGGTTCTGCTTCACATGTTTCTGCAGATTTTGGACAAAGGTATTATTATTCATGTATGGCTTCTCTTCCTTTGCATGGCTCCTCCCATAACAGACCACTCGGGATTCAAGTTCATTCCATGATTCACAAGCCCTTCTCTACTTCCTCTCTTCAACCACGTCGTTTCCAGAAGAATCATCCATTATTCGGGGCTTCCTATGTTTGGGCAGGAACTGAATCATCATCAGCTTCTTTAACTTCTGGGACTCCAAAGTTTTCTCCAAGGCCTGTCACAGAGGAACTTCACAAACTTGACTTGTCCCTCAGACTGTGA 579 0.4629 MDSQADKTQKQTETEDQQCQQRSSSSSSPPPRLDLSLSNYSSSESPHGRIFSCNYCHRKFYSSQALGGHQNAHKRERTLAKRGHNNDVGGSASHVSADFGQRYYYSCMASLPLHGSSHNRPLGIQVHSMIHKPFSTSSLQPRRFQKNHPLFGASYVWAGTESSSASLTSGTPKFSPRPVTEELHKLDLSLRL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5802g00003 192 Gene3D Classic Zinc Finger 31 98 - -
Pral5802g00003 192 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 21 153 IPR044246 GO:0009788
Pral5802g00003 192 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 78 IPR013087 -
Pral5802g00003 192 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Pral5802g00003 192 MobiDBLite consensus disorder prediction 14 46 - -
Pral5802g00003 192 MobiDBLite consensus disorder prediction 1 46 - -
Pral5802g00003 192 SUPERFAMILY beta-beta-alpha zinc fingers 48 78 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5802g00003 Pral-Chr5802 17672 18592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5802g00003 49 133 C2H2 Transcription Factor Family AT1G80730 64.045 1.07e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5802g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5802g00003 - - pcin:129287570 242.276