Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5801g00088 ATGGAAGGTGACAAGACAACCCCAGCTCCATCAGATGGACTCACTGACGGTGTTCAGAAAATTAGGGCCCTGCATGGGCGGACTAGTGGCCCTACCAGGCGTTCTACAAAAGGACAATGGACACCGGAAGAGGATGAGATCTTGAGGAAGGCCGTACAACGCTTTAAAGGAAAGAATTGGAAGAAAATAGCGGAGTGTTTCAAGGATAGAACAGATGTACAATGTCTACATAGGTGGCAGAAAGTCTTAAATCCTGAACTGGTCAAAGGTCCATGGTCTAAAGAGGAAGACGAAATAATAATTGATTTGGTGAACAAATATGGGCCAAAAAAATGGTCTACTATTGCACAGCACTTACCTGGACGAATTGGTAAGCAATGCCGAGAAAGGTGGCATAATCATCTCAATCCCGCTATAAACAAAGAAGCATGGACTCAAGAAGAGGAGTTGGCTCTAATACGTGCGCATCAAATTTATGGGAACAGATGGGCCGAATTGACGAAGTTCTTGCCTGGAAGGACGGACAATGCTATAAAAAATCACTGGAACAGCTCTGTCAAAAAAAAATTGGATTCTTACTTGGCGTCAGGTATGCTTATACCCCATGTTGGACATCCAAATCAGCCCATGGTTTCTACATCTTCGAGGTTACTTTGTAGTGGAGATGACAGTGGTCAGAAGGGAATCGGAGAGGAAGTTTCAGAATGTAGCCAAGAGTCTGCTAGTGCTAGTCATCTACCGGTTTCCGGAGAAATGACAAGGGTTGTTTTACATGCTAGAGAAGAAACCAAGCCAAATGAATATTCTAGTCGAGGAAAGGAGCAAAGTCCTAGTCAAGCATCATGTTCAGAGCCATATTGCATACCACTGGATGATGTTACCCTGTCCAACTCAGACATTGCTCGTGAAGAGGCTTCCTCTTCTCGATTCACTGAGCAAAAATACTCACACGAGCCTGGAAATTCTGCAGGCATGGATAATAGATTCCAATTACATGGTTTACCCAGCATTTCATCATTAGACTTGGGTCAGGAATTCTCACTTTTGCAAGGAGATTGTATAGTTTCTGATGATAACCATGACATTGTGAATGCTCAATTTCATACTTCAATGGGGTTGGGTATGGCAACATCTATGGCTCCCACTTCTATGGATTCTTCTAAACCAGAGGACATGTTGATGGCTGATGAAGAATGTTGTAGAGTTCTTTTTTCTGATGCAATGAATGATGGAACCTTTTCATCCGGAGATCACAACAAAGGTGTTGATATGGTTTTGCCCGCGTGCACTTCAAATCTTTTCCAATCATCTGATATCCAGATATCTGATGCTGATCGAACCTCAGTTAATGATGGCAGAGTATTGTACACTGGTGAAGCCGCACGAATATATGGAGTTGAGCACTTTGCCTCCAACGCACATGACAGCTTCATGTACCCCAACGATTCATCCATCTCACCTTGCATTGATATTATAGATAGTGCTGAAATGCACGATGGCCCCAATATTGTGAATGATGCATTAACATTGGTCCCTGTAAATAATTTCACCTGTGCATCGGATGCCATGCAAACTTGTAATCCAATGGATGAAAAGGCAGATGTGCAAACAGGGCAGGAGGACACGGGATCTCTATGTTATGAACCTCCTCGATTTCCGAGCTTGGATATTCCTTTCTTCAGCTGCGATCTTATACAACATGGAGGGGATATGCAGCAAGATTTCAGTCCACTGGGAATCCGCCGGCTTATGATGTCATCAGTGAACAGTCCAACTCCTTTGATGTTGTGGGATTCGCCTTCTCGTGATGATAGTCCAGATGCTTTGTTGAGAAGTGCTGCGAAAACTTTCACTAGCACCCCATCCATTTTAAAGAAGCGACGCCGGGACTTGTTATCACCATTATCAGATAAGAGAATCGAGAAGAAACTTGAGACTGACATGACATCCACGTTGACTACACGTTTTTCACATTTGGATGTAATGTTTGATGAAAATGAAGCTCAGGCTGCGAATATGCTTCCTCCGTCGTCAATACAGAAACATAAAAATGGAGCTTCTGATGATCATAAAGAAAATTGTGGGCCAGCTTTGAAAGGAGAGCATGTAGAGGGAAAAAAGGAATCTACCATTTTGAGGTGCAAAGAGTCAGAAAAAGATACCGGCAATAATAACTCTCAGGACGTTGATTCGAAGATGGAGACCGATCCTGATGCTGCTGCTGAGATTGGCCAACATCCTTCCGGAGTCTTAATCGAACATGATATGAATGACTTGCTATTGTATTCTCCAAATCAAATTCGTCTTGGCTCGGATAGAACTCACATTTCAAGTGCTAGAACTCCCAAAAGCCTGAGCAACAGAAGCTTAGAAGCAGCCCCAAATGAGAATATCGCTACGAAATCATTTAATGGAAATCCCTGCACAAGTGATTGCTCTCCTTCTGTTCGTGTAAAGGAGCACGAAATTTCTTCAGTTCGACCATCTCACTGTTCATCTGCCCCTGCGGAGAATTCTGGTGATCATGCTGGGAATGATGCTGGTTTTGAATCATTCAGCATATTTGGAGGAACACCTTTTAGAAGAAGCATTGAATCACCTTCAGCATGGAAGTCCCCTTGGTTCATTAACACTTTTCTGACTAGCCCCAGAATTGATGCTGAAATTACGATTGAGGATTTTGGGTATTTAATGAGCCCGGGTGATAGAAACTATGATGCAATTGGGTGGATGAAGCAGGTCAAGGAACAAACTGCGGCTGCATATGCCGATGCTGAGGAGATTTTGGAAATCGACACTCCAAAAGCAAAAGATGCATCTGGAAAAGCGGGGGATGGGGGCCAGGAAAGAGGAGATCCTCGTAATCAGCCAGGCGATCATTGTCAGTTAGCTTCTACAAATGCTTTGATGGAGCGACGGGTACTTGACTTCAGTGAGTGTGGATCACCAGGAAAGGAGAACAGCAAATCTTCAGCTGTGACCTTCTCAAGCTCCTCGTCATATTTATTGAAAGGGTGCAGATAG 3024 0.4358 MEGDKTTPAPSDGLTDGVQKIRALHGRTSGPTRRSTKGQWTPEEDEILRKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIDLVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPAINKEAWTQEEELALIRAHQIYGNRWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYLASGMLIPHVGHPNQPMVSTSSRLLCSGDDSGQKGIGEEVSECSQESASASHLPVSGEMTRVVLHAREETKPNEYSSRGKEQSPSQASCSEPYCIPLDDVTLSNSDIAREEASSSRFTEQKYSHEPGNSAGMDNRFQLHGLPSISSLDLGQEFSLLQGDCIVSDDNHDIVNAQFHTSMGLGMATSMAPTSMDSSKPEDMLMADEECCRVLFSDAMNDGTFSSGDHNKGVDMVLPACTSNLFQSSDIQISDADRTSVNDGRVLYTGEAARIYGVEHFASNAHDSFMYPNDSSISPCIDIIDSAEMHDGPNIVNDALTLVPVNNFTCASDAMQTCNPMDEKADVQTGQEDTGSLCYEPPRFPSLDIPFFSCDLIQHGGDMQQDFSPLGIRRLMMSSVNSPTPLMLWDSPSRDDSPDALLRSAAKTFTSTPSILKKRRRDLLSPLSDKRIEKKLETDMTSTLTTRFSHLDVMFDENEAQAANMLPPSSIQKHKNGASDDHKENCGPALKGEHVEGKKESTILRCKESEKDTGNNNSQDVDSKMETDPDAAAEIGQHPSGVLIEHDMNDLLLYSPNQIRLGSDRTHISSARTPKSLSNRSLEAAPNENIATKSFNGNPCTSDCSPSVRVKEHEISSVRPSHCSSAPAENSGDHAGNDAGFESFSIFGGTPFRRSIESPSAWKSPWFINTFLTSPRIDAEITIEDFGYLMSPGDRNYDAIGWMKQVKEQTAAAYADAEEILEIDTPKAKDASGKAGDGGQERGDPRNQPGDHCQLASTNALMERRVLDFSECGSPGKENSKSSAVTFSSSSSYLLKGCR 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5801g00088 1007 CDD SANT 91 135 IPR001005 -
Pral5801g00088 1007 MobiDBLite consensus disorder prediction 983 1007 - -
Pral5801g00088 1007 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Pral5801g00088 1007 Gene3D - 36 88 - -
Pral5801g00088 1007 PANTHER MYB PROTEIN-RELATED 37 110 - -
Pral5801g00088 1007 Gene3D - 89 140 - -
Pral5801g00088 1007 MobiDBLite consensus disorder prediction 826 845 - -
Pral5801g00088 1007 FunFam Transcription factor MYB3R-2 142 207 - -
Pral5801g00088 1007 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Pral5801g00088 1007 FunFam Transcriptional activator Myb isoform A 89 141 - -
Pral5801g00088 1007 MobiDBLite consensus disorder prediction 932 956 - -
Pral5801g00088 1007 MobiDBLite consensus disorder prediction 683 738 - -
Pral5801g00088 1007 MobiDBLite consensus disorder prediction 932 961 - -
Pral5801g00088 1007 MobiDBLite consensus disorder prediction 1 42 - -
Pral5801g00088 1007 FunFam Transcriptional activator Myb isoform A 36 88 - -
Pral5801g00088 1007 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Pral5801g00088 1007 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Pral5801g00088 1007 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Pral5801g00088 1007 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Pral5801g00088 1007 MobiDBLite consensus disorder prediction 301 323 - -
Pral5801g00088 1007 CDD SANT 40 83 IPR001005 -
Pral5801g00088 1007 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Pral5801g00088 1007 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Pral5801g00088 1007 Gene3D - 142 198 - -
Pral5801g00088 1007 SMART sant 140 188 IPR001005 -
Pral5801g00088 1007 SMART sant 88 137 IPR001005 -
Pral5801g00088 1007 SMART sant 36 85 IPR001005 -
Pral5801g00088 1007 SUPERFAMILY Homeodomain-like 38 93 IPR009057 -
Pral5801g00088 1007 CDD SANT 143 183 IPR001005 -
Pral5801g00088 1007 MobiDBLite consensus disorder prediction 261 283 - -
Pral5801g00088 1007 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Pral5801g00088 1007 MobiDBLite consensus disorder prediction 980 1007 - -
Pral5801g00088 1007 MobiDBLite consensus disorder prediction 680 738 - -
Pral5801g00088 1007 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5801g00088 Pral-Chr5801 446267 452799 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5801g00088 9 1007 MYB Transcription Factor Family AT4G32730 42.925 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5801g00088 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5801g00088 - K09420 gmx:100811335 1249.19