Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5801g00060 ATGAAAGATCAAGACAGTAATTATAAAGCATCAAGACCCCATTTGAACAAGAGTTTCCACTCCATGCAAAAGAAAGAGAAGGAAGCAAGGAAAGAAGGGAGGGATAAGGAAATGGAAGGAAGTGGGACGAAGGAGGAAACCCTACCTCCTGGGTTCCGATTTCATCCCACAGATGAAGAACTCATCACTAGCTATCTCATCAACAAGATCTCTGATTCTTCCTTTACTGCAAGAGCCGTCACTGATGTCGATCTCAACAAATGCGAGCCATGGGAACTCCCTGGGAAGGCGAAGATGGGAGAGAAAGAGTGGTACTTCTTCAGTCTGAGAGATCGGAAATACCCGACGGGCGTGAGAACCAACAGGGCGACCAACACAGGCTACTGGAAGACCACCGGAAAAGACAAGGAAATCCTTAACAGTGCTACATCGGAGTTGGTCGGCATGAAAAAGACTCTGGTTTTCTACAAAGGAAGAGCCCCCAGAGGTGAGAAAACCAACTGGGTCATGCACGAATATCGTATCCACTCAAAATCCTCCTTCAGACTACATAACAAGGACGAATGGGTGGTTTGCAGAGTTTTCCAGAAGAGCGGTGGAGCCAAAAAGTACCCTTCCAATCACACAAGAGGAGTGAATCCATACAGCCTGGACATAGCTCCTAACATTATGGGACCTTCCATGATGCATGTGGCGGATCCTAATTCTGCTCACTTCCTCTACGGAAGGAACTATGTCAACAGTGCTTCTGACATTGCAGAGGTTGCCAGGGTTTTGAGAGCAGGAGGAGGGGCTGCTGCTACCGCTGCTCTCAACCTTCCAATGCAATCCCATGCCCAGTTCAATTATCCTCCGGCAGCTGCAGCAGGAGGATTTACGATTTCCGGCCTCAACTTGAATCTCGCCGGAGGAGGAGGAGGAGGAACCACCGGGCTACCTGTTTTCCGGCCGATGAACCCCCATGATGCGGGCTCCAACATGATGACAGCAGGGAGTGCTCTCAATGGAGCAGATCATGTGGGGTACGGTGCTGCAGAAATGAGCAACCCTAATAACATTGGTCCAAGCAACAGGTTCATTGGGATGGACCATTGTGTGGATTTAGATAACTACTGGCCTTCCTACTAA 1128 0.4911 MKDQDSNYKASRPHLNKSFHSMQKKEKEARKEGRDKEMEGSGTKEETLPPGFRFHPTDEELITSYLINKISDSSFTARAVTDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSATSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSSFRLHNKDEWVVCRVFQKSGGAKKYPSNHTRGVNPYSLDIAPNIMGPSMMHVADPNSAHFLYGRNYVNSASDIAEVARVLRAGGGAAATAALNLPMQSHAQFNYPPAAAAGGFTISGLNLNLAGGGGGGTTGLPVFRPMNPHDAGSNMMTAGSALNGADHVGYGAAEMSNPNNIGPSNRFIGMDHCVDLDNYWPSY 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5801g00060 375 ProSiteProfiles NAC domain profile. 48 197 IPR003441 GO:0003677|GO:0006355
Pral5801g00060 375 MobiDBLite consensus disorder prediction 1 54 - -
Pral5801g00060 375 SUPERFAMILY NAC domain 44 197 IPR036093 GO:0003677|GO:0006355
Pral5801g00060 375 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 45 220 - -
Pral5801g00060 375 Pfam No apical meristem (NAM) protein 49 175 IPR003441 GO:0003677|GO:0006355
Pral5801g00060 375 Gene3D NAC domain 57 200 IPR036093 GO:0003677|GO:0006355
Pral5801g00060 375 MobiDBLite consensus disorder prediction 19 43 - -
Pral5801g00060 375 FunFam NAC domain-containing protein 100-like 57 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5801g00060 Pral-Chr5801 311949 314251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5801g00060 44 375 NAC Transcription Factor Family AT2G24430 50.141 2.51e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral5801g00060 NAM 3.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5801g00060 - - gmx:100804931 469.544